# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.68e-28 f.4.3.1 133439 1e54A 332 1.06e-25 f.4.3.1 59258 2j1nA 346 1.17e-23 1hxxA 340 3.67e-23 f.4.3.1 61385 2porA 301 1.60e-21 f.4.3.1 43759 2por 301 2.84e-21 2omf 340 9.64e-21 1prn 289 1.37e-20 3prnA 289 2.15e-20 f.4.3.1 43761 3prn 289 4.35e-20 1t16A 427 10.62 f.4.3.4 106242 1h2aL 567 12.20 e.18.1.1 43299 1kv9A 668 12.46 a.3.1.6,b.70.1.1 73056,73057 1ubkL 534 12.53 e.18.1.1 88422 1wraA 308 14.02 d.157.1.8 121190 1qgdA 662 17.17 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1h2rL 534 20.91 e.18.1.1 43298 2f1wA 158 21.69 1w23A 360 21.85 c.67.1.4 114088 2c0rA 362 22.08 c.67.1.4 129604 1bxwA 172 22.74 f.4.1.1 43743 2bhgA 209 24.30 1wuiL 534 28.27 e.18.1.1 121289 1ay0A 680 29.44 c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 1j0aA 325 30.26 c.79.1.1 83871 1gbsA 185 34.90 d.2.1.5 36986 1o94A 729 35.57 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1g72A 573 37.03 b.70.1.1 27680 1b76A 442 37.43 c.51.1.1,d.104.1.1 33198,40747 2iizA 312 38.10 d.58.4.14 137444 2f7lA 455 38.24 1pg4A 652 39.98 e.23.1.1 88067 1r9jA 673 40.51 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2b4vA 468 40.83 a.160.1.4,d.218.1.10 127864,127865 1s5jA 847 41.29 c.55.3.5,e.8.1.1 112040,112041 1atiA 505 41.59 c.51.1.1,d.104.1.1 33196,40745 2gufA 594 42.12 f.4.3.3 135736 1hm6A 346 46.52 a.65.1.1 18147 2jg0A 535 46.72 1zx5A 300 47.59 b.82.1.3 125763 2r5nA 669 48.75 1fepA 724 51.34 f.4.3.3 43808 1qj8A 148 51.94 f.4.1.1 43744 1xkwA 665 52.03 2fcpA 723 54.64 f.4.3.3 43802 2frvB 536 56.86 e.18.1.1 43291 1vraA 208 57.85 1lvmA 229 60.07 b.47.1.3 78243 2ntpA 342 60.67 1f1uA 323 60.82 d.32.1.3,d.32.1.3 83200,83201 1e3dB 542 61.71 e.18.1.1 59189 1trkA 680 65.47 c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 1nr6A 473 66.01 a.104.1.1 92085 2o4vA 411 66.69 1itzA 675 68.72 c.36.1.10,c.36.1.6,c.48.1.1 76797,76798,76799 1rgyA 360 68.88 e.3.1.1 97456 1txnA 328 69.01 d.248.1.1 112779 1vgyA 393 69.23 c.56.5.4,d.58.19.1 100620,100621 3pmgA 561 69.80 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1vlbA 907 70.63 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1l8aA 886 70.90 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2bm0A 691 72.62 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1yiqA 689 74.19 1frvB 536 74.41 e.18.1.1 43296 2hs3A 603 75.59 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1v25A 541 75.93 e.23.1.1 108275 1vk3A 615 77.17 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2ozlB 341 81.70 c.36.1.7,c.48.1.2 139447,139448 4aahA 571 82.50 b.70.1.1 27678 2r8oA 669 83.82 1nqeA 594 84.97 f.4.3.3 86027 1a9xA 1058 86.34 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1ut9A 609 86.96 a.102.1.2,b.1.18.2 99912,99913 1vb5A 276 87.07 c.124.1.5 113604 2h5eA 529 87.64 2oxaA 600 87.77 1bjnA 360 87.97 c.67.1.4 34469 1axn 323 88.81 2azpA 318 89.12