# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fgqX	332	1.87e-30	f.4.3.1	133439
1e54A	332	6.79e-28	f.4.3.1	59258
2j1nA	346	7.13e-27		
1hxxA	340	6.96e-26	f.4.3.1	61385
2porA	301	3.31e-24	f.4.3.1	43759
2por	301	6.94e-24		
1prn	289	2.18e-23		
2omf	340	2.57e-23		
3prn	289	3.37e-23		
3prnA	289	5.48e-23	f.4.3.1	43761
1t16A	427	0.2804	f.4.3.4	106242
1bxwA	172	0.4309	f.4.1.1	43743
1p4tA	155	0.6074	f.4.1.1	87779
2gufA	594	0.7191	f.4.3.3	135736
1tlyA	278	0.7579	f.4.6.1	107143
1pvc1	301	0.9811		
1hxs1	302	1.250		
1fepA	724	1.266	f.4.3.3	43808
1nqeA	594	1.394	f.4.3.3	86027
2hdiA	639	1.716		
2fcpA	723	1.782	f.4.3.3	43802
1qj8A	148	2.063	f.4.1.1	43744
1qfgA	725	3.391	f.4.3.3	43803
1by5A	714	4.192	f.4.3.3	43800
1po0A	751	5.364	f.4.3.3	94960
1al21	302	7.455		
1ar61	302	9.433		
1kmoA	774	9.858	f.4.3.3	72753
1tme1	274	10.54		
1aym1	285	11.42		
1ar71	302	11.89		
1qjpA	171	15.76	f.4.1.1	43742
2bhgA	209	18.18		
1f1uA	323	19.03	d.32.1.3,d.32.1.3	83200,83201
1pov1	302	20.09		
2j21A	219	20.22		
2awkA	228	22.98		
1rhi3	236	23.20		
1b76A	442	23.47	c.51.1.1,d.104.1.1	33198,40747
2mev1	277	26.37		
1rocA	155	26.71	b.1.22.1	97673
1zxiC	288	27.11	d.87.2.1,d.145.1.3	125776,125777
2o4vA	411	27.27		
1onwA	390	29.10	b.92.1.7,c.1.9.13	87172,87173
2oqcA	327	32.79		
2f1cX	286	35.29		
1q2wA	308	40.60	b.47.1.4	88355
1xssA	225	41.10		
1vb5A	276	41.22	c.124.1.5	113604
2mprA	421	42.20	f.4.3.2	43788
2iwvA	281	42.89		
1r1a1	287	45.19		
1atiA	505	50.38	c.51.1.1,d.104.1.1	33196,40745
2f1vA	197	52.30		
2h9bA	312	53.05		
1lvoA	302	53.08	b.47.1.4	74284
1ww7A	160	53.27		
2h98A	313	55.80		
1c7iA	489	58.22	c.69.1.1	34632
1bob	320	59.75		
2jqyA	280	60.07		
2jdiD	482	66.31	a.69.1.1,b.49.1.1,c.37.1.11	138263,138264,138265
1a5kC	566	66.45	b.92.1.1,c.1.9.2	28425,29047
2f1wA	158	68.52		
2og5A	357	68.82		
2obtA	327	68.95		
1al3A	324	70.38	c.94.1.1	35835
2c61A	469	71.75		
1vlrA	350	77.80	d.13.1.3,d.246.1.1	108860,108861
2dpyA	438	78.65		
1ay0A	680	80.36	c.36.1.10,c.36.1.6,c.48.1.1	31823,31824,33100
2ixeA	271	81.10		
1w23A	360	81.25	c.67.1.4	114088
1qa7A	217	82.22	b.47.1.4	26425
3ck2A	176	85.57		
1q16A	1247	87.95	b.52.2.2,c.81.1.1	95546,95547
1qd5A	275	89.41	f.4.2.1	43748
1my5A	114	89.87	b.1.18.1	79673