# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 5.96e-18 f.4.3.1 133439 1e54A 332 1.76e-16 f.4.3.1 59258 2j1nA 346 2.65e-15 1hxxA 340 8.53e-15 f.4.3.1 61385 2por 301 1.09e-13 2porA 301 1.17e-13 f.4.3.1 43759 3prn 289 3.33e-13 2omf 340 4.41e-13 1prn 289 5.64e-13 3prnA 289 1.53e-12 f.4.3.1 43761 1i31A 314 4.289 b.2.7.1 22481 2oayA 391 4.524 1xruA 282 4.641 b.82.1.13 122262 2bbdA 350 5.918 2j04A 588 7.269 1n67A 359 8.517 b.2.3.4,b.2.3.4 85354,85355 1ng4A 390 8.533 c.3.1.2,d.16.1.3 85666,85667 2tbvA 387 10.68 b.121.4.7 23302 1jroB 777 10.80 d.41.1.1,d.133.1.1 67141,67142 1n6eA 1071 10.83 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1t6eX 381 12.19 b.50.1.2 106564 1xipA 388 12.98 b.69.14.1 115360 1fiqC 763 13.06 d.41.1.1,d.133.1.1 38588,41418 1bob 320 13.18 1bxxA 285 13.24 b.2.7.1 22483 2ny1B 184 13.36 b.1.1.1,b.1.1.3 138764,138765 1bw8A 321 15.00 b.2.7.1 22482 1jv2A 957 15.10 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 1ei5A 520 15.85 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1q2wA 308 16.59 b.47.1.4 88355 1rhi3 236 17.46 3blcA 330 17.77 1pfo 500 17.98 1c0pA 363 18.48 c.4.1.2,d.16.1.3 30647,37934 1af6A 421 19.90 f.4.3.2 43772 2nn8A 138 22.68 b.29.1.3 138392 1lj5A 379 23.17 e.1.1.1 73928 1bobA 320 23.18 d.108.1.1 40816 1ve9A 347 23.61 c.4.1.2,d.16.1.3 100571,100572 1po0A 751 23.61 f.4.3.3 94960 2pefA 373 26.42 2bmoA 447 27.03 b.33.1.2,d.129.3.3 128804,128805 2jenA 261 28.21 1dgjA 907 28.23 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 17909,37694,38585,41415 1pl3A 186 28.33 b.1.9.1 88158 1a3k 137 28.41 1pvc3 238 29.48 2olnA 397 30.08 1l9cA 389 30.16 c.3.1.2,d.16.1.3 77815,77816 1ln1A 214 30.74 d.129.3.2 74038 1vmeA 410 32.20 c.23.5.1,d.157.1.3 108893,108894 1attA 421 32.75 e.1.1.1 42638 1rm6A 769 33.50 d.41.1.1,d.133.1.1 111872,111873 1o7nA 449 36.30 b.33.1.2,d.129.3.3 81162,81163 1iq4A 179 36.82 d.77.1.1 62641 1gycA 499 37.75 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1cc1L 498 37.80 e.18.1.1 43301 1aym3 238 39.42 2ampA 304 40.65 b.47.1.4 127021 2joeA 139 40.78 1ppjA 446 40.94 d.185.1.1,d.185.1.1 104252,104253 1bkzA 135 42.00 b.29.1.3 24202 2ozgA 396 42.46 2ealA 148 44.11 1dxkA 227 44.21 d.157.1.1 42036 2dq6A 870 45.00 1ndoA 449 46.66 b.33.1.2,d.129.3.3 24444,41323 1qh5A 260 46.83 d.157.1.2 42057 1jr7A 311 47.12 b.82.2.3 63255 2yv8A 164 47.93 1pk6C 129 48.30 b.22.1.1 94803 1p9sA 300 48.57 b.47.1.4 87999 1k1xA 659 49.06 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1w6sA 599 49.24 b.70.1.1 114284 1qasA 622 49.26 a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 2jg9C 131 51.08 2gf3A 389 51.31 c.3.1.2,d.16.1.3 135070,135071 2oxaA 600 52.59 1uh4A 637 53.30 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1eetA 557 54.43 c.55.3.1,e.8.1.2 33608,43078 1r89A 437 57.27 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1djxA 624 58.18 a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 2in5A 207 60.47 2d6mA 159 62.17 1lurA 339 64.01 b.30.5.4 84717 1e3dB 542 64.18 e.18.1.1 59189 1ar71 302 64.65 2qsvA 220 64.96 1nqeA 594 65.68 f.4.3.3 86027 1yfsA 465 65.86 a.203.1.1,d.104.1.1 123088,123089 1n7oA 721 67.01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2f01A 127 68.78 b.61.1.1 132647 1aozA 552 68.87 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1edhA 226 69.12 b.1.6.1,b.1.6.1 22198,22199 2a50B 168 69.28 1gl4A 285 70.20 d.22.1.2,g.3.11.5 65286,65287 1crzA 403 70.44 b.68.4.1,c.51.2.1 27629,33211 1em2A 229 71.73 d.129.3.2 41321 2odpA 509 71.79 1ql0A 241 71.97 d.4.1.2 37139 1ej6A 1289 72.12 i.7.1.1 45967 1ppjB 439 72.15 d.185.1.1,d.185.1.1 104254,104255 2zaiA 497 72.25 1t3qB 788 72.67 d.41.1.1,d.133.1.1 106369,106370 1hdkA 141 73.25 b.29.1.3 65807 1h6rA 236 73.57 d.22.1.1 65683 1wdaA 670 73.70 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 1fmjA 351 73.97 c.37.1.5 59879 1fepA 724 74.14 f.4.3.3 43808 2dexX 671 74.76 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 1kjlA 146 76.25 b.29.1.3 118689 2volB 180 77.02 1zx5A 300 79.51 b.82.1.3 125763 1p9qC 256 80.44 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1el5A 389 80.71 c.3.1.2,d.16.1.3 30369,37937 2camA 127 81.17 b.61.1.1 27407 1cov3 238 81.99 1oe1A 336 82.26 b.6.1.3,b.6.1.3 86891,86892 1ryiA 382 83.12 c.3.1.2,d.16.1.3 118813,118814 1rowA 109 83.39 b.1.11.2 97676 1xm8A 254 83.49 d.157.1.2 115475 3bwlA 126 85.99 1f0lA 535 86.62 b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2awkA 228 86.76 1lvoA 302 86.93 b.47.1.4 74284 2fcpA 723 87.57 f.4.3.3 43802 2i6qA 517 87.64 2qedA 258 87.75 2yr5A 721 88.76