# List of top-scoring protein chains for T0403.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1osmA 342 3.71e-27 f.4.3.1 43769 1phoA 330 6.56e-27 f.4.3.1 43758 2j1nA 346 3.31e-26 2ixwA 343 8.06e-26 2ixxA 354 1.63e-25 1hxuA 340 2.87e-25 f.4.3.1 61384 2omfA 340 4.46e-25 f.4.3.1 43749 1bt9A 340 5.15e-25 f.4.3.1 43756 1hxxA 340 5.23e-25 f.4.3.1 61385 2fgqX 332 5.42e-25 f.4.3.1 133439 2fgrA 332 5.63e-25 f.4.3.1 133440 1mpfA 340 6.60e-25 f.4.3.1 43752 1gfoA 340 9.27e-25 f.4.3.1 43753 1gfpA 340 9.81e-25 f.4.3.1 43750 1gfmA 340 1.21e-24 f.4.3.1 43755 1gfqA 340 1.51e-24 f.4.3.1 43751 1gfnA 334 1.29e-23 f.4.3.1 43754 1hxtA 340 4.33e-23 f.4.3.1 61383 2prnA 289 0.000349 f.4.3.1 43763 3prnA 289 0.000413 f.4.3.1 43761 1prnA 289 0.000458 f.4.3.1 43762 2porA 301 0.000529 f.4.3.1 43759 1bh3A 289 0.000619 f.4.3.1 43766 5prnA 289 0.000981 f.4.3.1 43764 1h6s1 307 0.001003 6prnA 289 0.001347 f.4.3.1 43765 7prnA 289 0.001555 f.4.3.1 43768 8prnA 289 0.004313 f.4.3.1 43767 1p4tA 155 0.1153 f.4.1.1 87779 1i78A 297 0.8757 f.4.4.1 66046 1f74A 293 1.280 c.1.10.1 29079 1vhwA 253 1.902 c.56.2.1 100706 2o4vA 411 1.962 1po0A 751 2.671 f.4.3.3 94960 1kmoA 774 2.795 f.4.3.3 72753 1by5A 714 8.714 f.4.3.3 43800 1t16A 427 9.285 f.4.3.4 106242 2bjqA 345 9.522 b.169.1.1,b.169.1.1 128626,128627 1a0tP 413 13.88 f.4.3.2 43794 1k8tA 510 16.11 e.41.1.1 68316 1pk0A 507 16.75 e.41.1.1 94795 2douA 376 20.09 2jaeA 489 23.53 2hpwA 233 24.35 2p7iA 250 24.51 2odjA 428 24.95 2fcpA 723 26.02 f.4.3.3 43802 1fcpA 705 26.07 f.4.3.3 43805 1qfgA 725 30.21 f.4.3.3 43803 1fi1A 707 30.27 f.4.3.3 59844 2dj0A 137 33.05 1mv8A 436 33.61 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1yqfA 203 37.01 d.25.1.1 123880 1uxvA 501 38.15 c.82.1.1 108127 1uxtA 501 39.34 c.82.1.1 108125 1o6vA 466 39.91 b.1.18.15,c.10.2.1 81099,81100 1nqfA 594 40.97 f.4.3.3 86028 1qd6C 240 41.25 2chlA 351 42.00 2izrA 330 42.65 2qv3A 457 45.30 2omzA 466 45.50 1tvkA 440 47.67 c.32.1.1,d.79.2.1 107362,107363 1fp3A 402 47.85 a.102.1.3 18842 1jffA 451 49.92 c.32.1.1,d.79.2.1 62932,62933 1ua4A 455 50.80 c.72.1.3 99128 1xkwA 665 51.00 2dpsA 254 52.36 2novA 496 52.52 1w6sA 599 52.60 b.70.1.1 114284 2z3oA 233 52.83 1vbgA 876 56.04 c.1.12.2,c.8.1.1,d.142.1.5 119951,119952,119953 1sa0A 451 56.96 c.32.1.1,d.79.2.1 98769,98770 1ilzA 275 57.49 f.4.2.1 66209 1tiyA 164 58.08 c.97.1.2 107012 2gufA 594 58.71 f.4.3.3 135736 2gskA 590 58.74 f.4.3.3 135587 1ffxA 451 58.76 i.10.1.1 46007 1h4jA 599 59.03 b.70.1.1 60590 1wkqA 164 59.04 c.97.1.2 109393 1wiwA 290 59.21 c.80.1.1 114681 1h4iA 599 64.28 b.70.1.1 60586 2qntA 141 65.98 1h0kA 364 66.11 b.35.1.2,c.2.1.1 83435,83436 1z2bA 448 68.77 1qd5A 275 70.47 f.4.2.1 43748 1n9gA 386 72.41 b.35.1.2,c.2.1.1 91720,91721 1gyrA 364 72.91 b.35.1.2,c.2.1.1 83386,83387 1gu7A 364 73.84 b.35.1.2,c.2.1.1 83321,83322 1fw3A 275 75.25 f.4.2.1 60054 2f1vA 197 77.42 1n9gB 386 80.36 b.35.1.2,c.2.1.1 91722,91723 2iciA 227 80.62 2cmwA 310 81.28 2cxaA 256 84.88 d.108.1.6 130993 2omyA 461 86.74 b.1.18.15,c.10.2.1 139151,139152 1ky8A 501 89.85 c.82.1.1 77628