# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fgqX	332	2.79e-28	f.4.3.1	133439
2j1nA	346	4.60e-28		
1hxxA	340	3.03e-27	f.4.3.1	61385
2porA	301	1.15e-25	f.4.3.1	43759
2por	301	3.43e-25		
3prnA	289	1.89e-22	f.4.3.1	43761
3prn	289	3.97e-22		
2o4vA	411	1.57e-11		
1t16A	427	5.69e-05	f.4.3.4	106242
2gufA	594	0.001201	f.4.3.3	135736
1fepA	724	0.001361	f.4.3.3	43808
2mprA	421	0.001490	f.4.3.2	43788
1a0tP	413	0.001756	f.4.3.2	43794
1nqeA	594	0.002682	f.4.3.3	86027
1xkwA	665	0.01916		
1kmoA	774	0.03298	f.4.3.3	72753
1qj8A	148	0.03768	f.4.1.1	43744
2hdiA	639	0.04820		
1qjpA	171	0.05601	f.4.1.1	43742
1qfgA	725	0.07481	f.4.3.3	43803
1p4tA	155	0.09007	f.4.1.1	87779
2odjA	428	0.1866		
2f1vA	197	0.1962		
1i78A	297	0.3438	f.4.4.1	66046
2mev1	277	0.4776		
2f1cX	286	1.616		
1an8	208	1.800		
1epwA	1290	3.236	b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1	24269,25614,40305,45785
2iwvA	281	4.118		
2j4xA	213	4.615		
1qd6C	240	5.746		
1k0eA	453	7.454	d.161.1.1	67938
1v0eA	666	8.429	b.68.1.2,b.108.1.3	113466,113467
1ar61	302	8.926		
1et9A	204	10.65	b.40.2.2,d.15.6.1	25204,37793
1ukgA	252	10.97	b.29.1.1	99489
2jqyA	280	13.43		
1fnuA	221	13.60	b.40.2.2,d.15.6.1	25212,37801
1enfA	212	16.14	b.40.2.2,d.15.6.1	25198,37787
1bu8A	452	17.15	b.12.1.2,c.69.1.19	23647,34795
1zx5A	300	18.21	b.82.1.3	125763
2bjqA	345	18.91	b.169.1.1,b.169.1.1	128626,128627
2dpyA	438	20.07		
1e3dB	542	21.67	e.18.1.1	59189
1fnyA	237	21.73	b.29.1.1	59920
1d8hA	311	23.13	d.63.1.1	39544
1r1a1	287	24.09		
2ib5A	233	25.83		
1hn0A	1021	28.08	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
2v73A	191	28.76		
2e26A	725	30.46		
2qjvA	270	32.02		
1nls	237	33.15		
2q7nA	488	33.62		
2v24A	208	37.37		
2ervA	150	37.53		
2uurA	245	38.73		
1w99A	558	38.89		
2zb6A	481	40.17		
1al21	302	42.81		
2i5qA	415	44.27		
1ig3A	263	44.29	b.82.6.1,c.100.1.1	62358,62359
2hd9A	145	45.47		
2ia1A	178	46.56		
2g2uB	165	47.09	d.98.1.1	134541
1a0iA	348	48.16	b.40.4.6,d.142.2.1	25363,41577
2b02A	119	48.21		
1jtgB	165	50.02	d.98.1.1	67267
1ztpA	251	50.21	d.86.1.2	125649
1tyv	542	52.95		
1xkgA	312	55.13	d.3.1.1	122081
1p4uA	153	56.85	b.1.10.2	87780
1qcsA	211	57.32	b.52.2.3,d.31.1.1	26927,38461
2h7jA	220	58.93	d.3.1.1	136216
2p0iA	456	60.16		
1jz8A	1023	60.62	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
1uynX	308	60.71	f.4.5.1	100174
1avbA	226	62.73	b.29.1.1	24158
2a2cA	478	64.85		
1f3zA	161	64.98	b.84.3.1	28273
1ar71	302	69.51		
1gpr	162	71.84		
2qngA	199	73.23		
2dddA	225	73.42		
2iciA	227	74.99		
1owcA	427	75.88	a.103.1.1	104039
2bjrA	368	76.00	b.169.1.1,b.169.1.1	128628,128629
2qz7A	194	77.92		
1hxs1	302	78.65		
1yk3A	210	80.72	d.108.1.1	123493
2oz3A	404	80.97		
2a46A	238	81.11		
1hqlA	257	81.66	b.29.1.1	65907
2p86A	215	83.75		
2qzuA	491	87.78		
2bm0A	691	88.35	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752