# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 5.42e-34 f.4.3.1 133439 2j1nA 346 1.67e-33 1hxxA 340 8.32e-33 f.4.3.1 61385 2porA 301 1.26e-30 f.4.3.1 43759 2por 301 5.43e-30 3prnA 289 9.39e-27 f.4.3.1 43761 3prn 289 2.60e-26 2o4vA 411 2.19e-13 1t16A 427 3.04e-05 f.4.3.4 106242 1fepA 724 0.000283 f.4.3.3 43808 2gufA 594 0.000504 f.4.3.3 135736 1a0tP 413 0.000697 f.4.3.2 43794 2mprA 421 0.000936 f.4.3.2 43788 1nqeA 594 0.001289 f.4.3.3 86027 1xkwA 665 0.005928 1kmoA 774 0.02287 f.4.3.3 72753 1qjpA 171 0.02695 f.4.1.1 43742 1qj8A 148 0.03088 f.4.1.1 43744 1qfgA 725 0.03406 f.4.3.3 43803 1p4tA 155 0.05017 f.4.1.1 87779 2hdiA 639 0.05604 1i78A 297 0.06222 f.4.4.1 66046 2odjA 428 0.07632 2f1vA 197 0.08438 2mev1 277 0.1058 2iwvA 281 0.3523 2f1cX 286 0.4363 2jqyA 280 1.891 1ar61 302 2.871 1v0eA 666 2.947 b.68.1.2,b.108.1.3 113466,113467 1qd6C 240 5.495 1epwA 1290 6.933 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1an8 208 8.238 2ervA 150 8.785 1bu8A 452 9.434 b.12.1.2,c.69.1.19 23647,34795 2dpyA 438 10.33 1r1a1 287 10.44 1al21 302 11.86 1e3dB 542 12.22 e.18.1.1 59189 2j4xA 213 13.05 1ukgA 252 17.79 b.29.1.1 99489 1zx5A 300 19.61 b.82.1.3 125763 1jetA 517 19.62 c.94.1.1 35718 1fnyA 237 21.21 b.29.1.1 59920 1jtgB 165 25.14 d.98.1.1 67267 2g2uB 165 25.39 d.98.1.1 134541 1d8hA 311 26.48 d.63.1.1 39544 1ar71 302 28.97 1ztpA 251 31.44 d.86.1.2 125649 1mzyA 333 32.20 b.6.1.3,b.6.1.3 103848,103849 2uurA 245 33.48 2q7nA 488 35.98 1hn0A 1021 37.93 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1et9A 204 38.52 b.40.2.2,d.15.6.1 25204,37793 2ib5A 233 38.66 1tyv 542 38.84 1k0eA 453 39.48 d.161.1.1 67938 1hplA 449 41.18 b.12.1.2,c.69.1.19 23639,34787 1fnuA 221 41.28 b.40.2.2,d.15.6.1 25212,37801 1a0iA 348 42.02 b.40.4.6,d.142.2.1 25363,41577 2hqyA 305 42.80 2bjqA 345 43.44 b.169.1.1,b.169.1.1 128626,128627 2v73A 191 43.82 1l7aA 318 45.38 c.69.1.25 77772 1owcA 427 45.60 a.103.1.1 104039 2a2cA 478 46.17 2i5qA 415 48.94 2hd9A 145 49.01 1enfA 212 52.81 b.40.2.2,d.15.6.1 25198,37787 1aym1 285 53.33 1hxs1 302 54.38 2dddA 225 54.73 2ejoA 223 56.26 1xkgA 312 58.54 d.3.1.1 122081 2e26A 725 59.19 2ddfA 257 59.26 1xn5A 146 61.70 d.129.3.5 115574 1ztxE 108 62.34 b.1.18.4 125658 1p4uA 153 65.03 b.1.10.2 87780 2zb6A 481 65.25 1yreA 197 66.50 d.108.1.1 123919 1nls 237 68.83 1f3zA 161 71.19 b.84.3.1 28273 1gkrA 458 71.78 b.92.1.3,c.1.9.6 70251,70252 1c8cA 64 71.88 b.34.13.1 59084 2ivfC 214 73.61 2dduA 387 78.54 1jz8A 1023 78.99 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2qzuA 491 79.56 1d3cA 686 79.95 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1o91A 178 80.42 b.22.1.1 92656 1tlyA 278 81.47 f.4.6.1 107143 2qngA 199 83.11 1zirA 173 83.35 b.11.1.1,b.11.1.1 125126,125127 2p0iA 456 85.89 2qjvA 270 86.32 2c61A 469 87.91 2qz7A 194 88.22 1dhkB 223 88.32 b.29.1.1 24157 1g8lA 411 89.12 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2ia1A 178 89.84