# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.74e-39 f.4.3.1 133439 2j1nA 346 3.93e-38 1hxxA 340 1.45e-37 f.4.3.1 61385 2porA 301 2.24e-35 f.4.3.1 43759 2por 301 1.09e-34 3prnA 289 7.08e-31 f.4.3.1 43761 3prn 289 3.81e-30 2o4vA 411 1.68e-14 1t16A 427 1.63e-05 f.4.3.4 106242 2gufA 594 9.59e-05 f.4.3.3 135736 1a0tP 413 0.000255 f.4.3.2 43794 1nqeA 594 0.000281 f.4.3.3 86027 1fepA 724 0.000306 f.4.3.3 43808 2mprA 421 0.004404 f.4.3.2 43788 1xkwA 665 0.004470 1kmoA 774 0.01533 f.4.3.3 72753 2odjA 428 0.02621 2hdiA 639 0.02859 1p4tA 155 0.03295 f.4.1.1 87779 1qj8A 148 0.04540 f.4.1.1 43744 1qjpA 171 0.05034 f.4.1.1 43742 1i78A 297 0.05235 f.4.4.1 66046 1qfgA 725 0.08591 f.4.3.3 43803 2f1vA 197 0.1808 2iwvA 281 0.4509 2mev1 277 0.5960 1jetA 517 0.6652 c.94.1.1 35718 1qd6C 240 0.8729 2f1cX 286 1.002 1v0eA 666 1.810 b.68.1.2,b.108.1.3 113466,113467 1k0eA 453 2.224 d.161.1.1 67938 1e3dB 542 2.242 e.18.1.1 59189 1an8 208 2.707 2dpyA 438 2.728 2bjqA 345 2.866 b.169.1.1,b.169.1.1 128626,128627 1enfA 212 3.383 b.40.2.2,d.15.6.1 25198,37787 1fnuA 221 3.713 b.40.2.2,d.15.6.1 25212,37801 2qv3A 457 4.525 1tyv 542 4.934 2jqyA 280 6.216 1w99A 558 6.330 1g8lA 411 9.184 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1w7cA 747 11.45 1ar61 302 12.88 2a2cA 478 13.28 1bu8A 452 13.39 b.12.1.2,c.69.1.19 23647,34795 1w6gA 646 13.48 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2e7uA 424 14.36 2ac1A 541 14.94 2bjrA 368 15.27 b.169.1.1,b.169.1.1 128628,128629 2oqeA 660 15.59 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1r1a1 287 16.64 4dpvZ 584 17.07 b.121.5.2 23377 1xocA 520 17.63 c.94.1.1 122201 1ofzA 312 18.15 b.68.8.1 86978 1dpeA 507 18.60 c.94.1.1 35799 1l7aA 318 18.62 c.69.1.25 77772 1ztpA 251 18.70 d.86.1.2 125649 2j4xA 213 18.76 2ib5A 233 20.19 2nqrA 411 20.72 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2fgtA 417 21.71 1vjuA 309 21.90 d.248.1.1 100835 1rjoA 646 21.92 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 1epwA 1290 23.97 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1rq2A 382 24.10 c.32.1.1,d.79.2.1 105048,105049 1ukgA 252 27.14 b.29.1.1 99489 1w2tA 432 27.35 b.29.1.19,b.67.2.3 120607,120608 1uqwA 509 28.25 c.94.1.1 99799 2q9uA 414 29.18 2c61A 469 29.33 2aioA 269 29.42 d.157.1.1 126829 1zgkA 308 29.72 2gumA 628 32.27 2nykA 285 34.67 1et9A 204 34.73 b.40.2.2,d.15.6.1 25204,37793 1njgA 250 36.69 c.37.1.20 85785 1cs1A 386 36.71 c.67.1.3 34399 1wl7A 312 38.69 b.67.2.1 120996 2ervA 150 39.28 2cclA 158 40.40 b.2.2.2 130248 2ftwA 521 40.67 b.92.1.3,c.1.9.6 134083,134084 1f3zA 161 40.73 b.84.3.1 28273 1d3cA 686 40.94 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2hqyA 305 41.11 2csuA 457 42.75 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2d1wA 638 43.23 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1al21 302 43.96 3fibA 249 44.18 d.171.1.1 42455 1hplA 449 44.87 b.12.1.2,c.69.1.19 23639,34787 2epjA 434 45.72 1c8cA 64 46.36 b.34.13.1 59084 1qh5A 260 46.58 d.157.1.2 42057 2ejoA 223 47.16 1zx5A 300 48.61 b.82.1.3 125763 1kwgA 645 48.90 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1n1tA 641 49.19 b.29.1.15,b.68.1.1 79821,79822 1jz8A 1023 50.53 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2v5iA 559 50.56 2zb6A 481 51.72 1vr5A 547 53.91 c.94.1.1 120437 2p5zX 491 54.20 2gpjA 252 54.38 1zj8A 566 55.41 1dhkB 223 56.08 b.29.1.1 24157 1gteA 1025 56.11 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1csh 435 56.79 1o91A 178 56.84 b.22.1.1 92656 1n7oA 721 57.37 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1tlyA 278 58.36 f.4.6.1 107143 1xkgA 312 58.49 d.3.1.1 122081 2dkfA 431 58.96 1h7eA 245 59.93 c.68.1.13 60717 2sliA 679 60.81 b.29.1.9,b.68.1.1 24274,27611 2z0xA 158 62.13 2vpjA 301 67.30 2cm4A 150 67.62 1gpr 162 67.68 2ddfA 257 69.26 2sli 679 69.51 2ftsA 419 69.85 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2cy8A 453 70.50 2qomA 285 70.82 2ppvA 332 70.95 1owcA 427 71.62 a.103.1.1 104039 1n9eA 787 73.02 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1ztxE 108 73.80 b.1.18.4 125658 2p17A 277 74.24 2fn0A 437 77.01 d.161.1.1 133799 1lam 484 77.01 3cinA 394 77.62 2qnkA 286 78.00 3cddA 361 78.09 1txjA 171 78.22 b.88.1.2 107424 1fnyA 237 78.43 b.29.1.1 59920 2g2uB 165 78.69 d.98.1.1 134541 1aym1 285 79.27 2v73A 191 79.49 2o3oA 254 79.98 1tyvA 554 80.99 b.80.1.6 28038 2h7jA 220 81.12 d.3.1.1 136216 1jtgB 165 81.19 d.98.1.1 67267 2oblA 347 81.89 1y3nA 490 81.96 c.94.1.1 122597 2b02A 119 82.84 2gcuA 245 84.76 1dcsA 311 85.17 b.82.2.1 28124 2eefA 156 87.82 1lamA 484 88.74 c.50.1.1,c.56.5.3 33166,33829 1h6lA 353 89.89 b.68.3.1 60687