# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.35e-37 f.4.3.1 133439 2j1nA 346 6.98e-37 1hxxA 340 5.56e-36 f.4.3.1 61385 2porA 301 6.17e-34 f.4.3.1 43759 2por 301 2.97e-33 3prnA 289 1.93e-29 f.4.3.1 43761 3prn 289 7.54e-29 2o4vA 411 2.70e-14 1t16A 427 1.13e-05 f.4.3.4 106242 2gufA 594 9.87e-05 f.4.3.3 135736 1nqeA 594 0.000216 f.4.3.3 86027 2mprA 421 0.000312 f.4.3.2 43788 1fepA 724 0.000407 f.4.3.3 43808 1a0tP 413 0.000796 f.4.3.2 43794 1xkwA 665 0.001737 1kmoA 774 0.005039 f.4.3.3 72753 2hdiA 639 0.006678 1p4tA 155 0.02970 f.4.1.1 87779 1qj8A 148 0.03287 f.4.1.1 43744 1qjpA 171 0.03886 f.4.1.1 43742 1qfgA 725 0.1071 f.4.3.3 43803 2f1vA 197 0.1140 2odjA 428 0.1212 1i78A 297 0.2048 f.4.4.1 66046 2mev1 277 0.2442 2f1cX 286 0.6220 1qd6C 240 0.8327 1v0eA 666 0.9252 b.68.1.2,b.108.1.3 113466,113467 2iwvA 281 0.9679 1an8 208 1.407 2dpyA 438 1.963 1jetA 517 5.447 c.94.1.1 35718 1ar61 302 8.372 1e3dB 542 8.892 e.18.1.1 59189 1fnuA 221 9.291 b.40.2.2,d.15.6.1 25212,37801 2a2cA 478 10.35 2j4xA 213 10.40 2jqyA 280 12.29 1r1a1 287 13.46 1k0eA 453 14.40 d.161.1.1 67938 1w6gA 646 15.01 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1q15A 503 15.38 c.26.2.1,d.153.1.1 95538,95539 1enfA 212 15.72 b.40.2.2,d.15.6.1 25198,37787 2bjqA 345 17.75 b.169.1.1,b.169.1.1 128626,128627 1tyv 542 18.56 1et9A 204 18.90 b.40.2.2,d.15.6.1 25204,37793 1rjoA 646 21.44 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 2ervA 150 21.58 1jz8A 1023 21.87 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1bu8A 452 22.64 b.12.1.2,c.69.1.19 23647,34795 1w7cA 747 22.98 2qv3A 457 23.43 2ib5A 233 25.48 1hplA 449 25.64 b.12.1.2,c.69.1.19 23639,34787 1l7aA 318 25.98 c.69.1.25 77772 1n1tA 641 31.14 b.29.1.15,b.68.1.1 79821,79822 2c61A 469 34.14 1ukgA 252 35.75 b.29.1.1 99489 2zb6A 481 38.30 1al21 302 41.68 1zx5A 300 44.48 b.82.1.3 125763 2dddA 225 45.56 1owcA 427 46.59 a.103.1.1 104039 1ztpA 251 47.20 d.86.1.2 125649 1mzyA 333 47.85 b.6.1.3,b.6.1.3 103848,103849 2ac1A 541 47.98 1ar71 302 48.15 2cm4A 150 48.69 1d8hA 311 50.27 d.63.1.1 39544 1tjcA 108 50.94 a.118.8.1 112440 1aym1 285 53.34 1yk3A 210 54.20 d.108.1.1 123493 1vjuA 309 55.19 d.248.1.1 100835 1yreA 197 56.01 d.108.1.1 123919 1uqwA 509 56.77 c.94.1.1 99799 2i7vA 459 57.19 1vr5A 547 57.63 c.94.1.1 120437 3cddA 361 58.76 1lam 484 58.82 1w2tA 432 58.91 b.29.1.19,b.67.2.3 120607,120608 2bjrA 368 61.46 b.169.1.1,b.169.1.1 128628,128629 1gpr 162 61.61 1gppA 237 61.68 b.86.1.2 76262 1yz1A 174 62.16 b.88.1.2 124264 3pcgA 200 64.10 b.3.6.1 22647 2v24A 208 64.69 2ckfA 454 67.09 1xpmA 396 67.39 c.95.1.2,c.95.1.2 115759,115760 1csh 435 68.47 1y3nA 490 69.19 c.94.1.1 122597 2uurA 245 69.74 2h7jA 220 69.96 d.3.1.1 136216 1n7oA 721 70.09 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2az4A 429 70.80 d.157.1.10 127597 1n9eA 787 71.84 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1xkgA 312 72.87 d.3.1.1 122081 2v73A 191 73.31 1ztxE 108 74.24 b.1.18.4 125658 2ivfC 214 75.12 1tlyA 278 76.09 f.4.6.1 107143 1txjA 171 77.75 b.88.1.2 107424 1ofzA 312 78.62 b.68.8.1 86978 2p5zX 491 79.46 1h8eA 510 80.98 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2cclA 158 81.30 b.2.2.2 130248 2qjvA 270 81.68 2jdiA 510 84.90 1xocA 520 87.03 c.94.1.1 122201 1bf2A 750 87.56 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1a0iA 348 88.23 b.40.4.6,d.142.2.1 25363,41577 2i1yA 301 88.24