# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 7.53e-33 f.4.3.1 133439 2j1nA 346 1.35e-32 1hxxA 340 1.40e-31 f.4.3.1 61385 2porA 301 8.28e-30 f.4.3.1 43759 2por 301 3.48e-29 3prnA 289 3.95e-26 f.4.3.1 43761 3prn 289 1.51e-25 2o4vA 411 9.46e-13 1t16A 427 4.78e-05 f.4.3.4 106242 2mprA 421 0.001142 f.4.3.2 43788 2gufA 594 0.001477 f.4.3.3 135736 1a0tP 413 0.002132 f.4.3.2 43794 1nqeA 594 0.002354 f.4.3.3 86027 1fepA 724 0.002601 f.4.3.3 43808 1xkwA 665 0.009528 1kmoA 774 0.02438 f.4.3.3 72753 2hdiA 639 0.02903 1qj8A 148 0.05279 f.4.1.1 43744 1qjpA 171 0.05720 f.4.1.1 43742 1p4tA 155 0.07500 f.4.1.1 87779 1qfgA 725 0.1009 f.4.3.3 43803 2mev1 277 0.2187 2f1vA 197 0.2336 1i78A 297 0.4734 f.4.4.1 66046 2odjA 428 0.5951 1v0eA 666 1.029 b.68.1.2,b.108.1.3 113466,113467 1an8 208 1.388 2f1cX 286 2.029 2iwvA 281 2.296 1qd6C 240 4.786 1e3dB 542 5.333 e.18.1.1 59189 1fnuA 221 8.338 b.40.2.2,d.15.6.1 25212,37801 1ar61 302 8.771 1r1a1 287 8.809 1enfA 212 9.745 b.40.2.2,d.15.6.1 25198,37787 2j4xA 213 10.35 2dpyA 438 10.37 1et9A 204 13.60 b.40.2.2,d.15.6.1 25204,37793 1tyv 542 14.42 2a2cA 478 14.49 1jetA 517 15.54 c.94.1.1 35718 2bjqA 345 24.53 b.169.1.1,b.169.1.1 128626,128627 2jqyA 280 24.62 1aym1 285 24.79 1k0eA 453 26.16 d.161.1.1 67938 1jz8A 1023 26.96 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2ib5A 233 27.89 1w6gA 646 28.52 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2qv3A 457 31.88 1ukgA 252 32.28 b.29.1.1 99489 1ar71 302 33.67 1zx5A 300 34.98 b.82.1.3 125763 1al21 302 36.47 2ervA 150 40.04 2dddA 225 40.92 1lam 484 42.62 1csh 435 43.73 1rjoA 646 43.94 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 1owcA 427 44.43 a.103.1.1 104039 2i7vA 459 45.42 1epwA 1290 46.11 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1n1tA 641 46.59 b.29.1.15,b.68.1.1 79821,79822 2zb6A 481 46.62 1ztpA 251 47.42 d.86.1.2 125649 1w7cA 747 48.24 1bu8A 452 49.36 b.12.1.2,c.69.1.19 23647,34795 1l7aA 318 50.70 c.69.1.25 77772 1d8hA 311 50.94 d.63.1.1 39544 1xkgA 312 55.70 d.3.1.1 122081 1yk3A 210 58.26 d.108.1.1 123493 2v24A 208 58.57 2ckfA 454 61.25 1hxs1 302 63.03 1gpr 162 63.41 1hplA 449 64.76 b.12.1.2,c.69.1.19 23639,34787 2p17A 277 68.44 1mzyA 333 70.83 b.6.1.3,b.6.1.3 103848,103849 1yreA 197 73.45 d.108.1.1 123919 2fgtA 417 75.01 2aq2B 237 75.91 b.40.2.2,d.15.6.1 127146,127147 2b02A 119 76.25 1dhkB 223 76.30 b.29.1.1 24157 2i71A 400 77.35 2qjvA 270 78.65 2bjrA 368 79.33 b.169.1.1,b.169.1.1 128628,128629 1y3nA 490 80.72 c.94.1.1 122597 1ztxE 108 81.27 b.1.18.4 125658 2h7jA 220 81.87 d.3.1.1 136216 2hd9A 145 82.49 2ddfA 257 83.33 4dpvZ 584 86.78 b.121.5.2 23377 2e26A 725 88.22