# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.14e-34 f.4.3.1 133439 2j1nA 346 5.34e-34 1hxxA 340 5.74e-33 f.4.3.1 61385 2porA 301 4.02e-31 f.4.3.1 43759 2por 301 1.85e-30 3prnA 289 3.31e-27 f.4.3.1 43761 3prn 289 1.23e-26 2o4vA 411 3.82e-13 1t16A 427 4.69e-05 f.4.3.4 106242 2mprA 421 0.001076 f.4.3.2 43788 2gufA 594 0.001277 f.4.3.3 135736 1nqeA 594 0.001622 f.4.3.3 86027 1fepA 724 0.001890 f.4.3.3 43808 1a0tP 413 0.003634 f.4.3.2 43794 1xkwA 665 0.006159 1kmoA 774 0.01498 f.4.3.3 72753 2hdiA 639 0.05756 1qj8A 148 0.06753 f.4.1.1 43744 1p4tA 155 0.07408 f.4.1.1 87779 1qjpA 171 0.08585 f.4.1.1 43742 1qfgA 725 0.1149 f.4.3.3 43803 2f1vA 197 0.2770 2mev1 277 0.3454 1i78A 297 0.3927 f.4.4.1 66046 1v0eA 666 0.8908 b.68.1.2,b.108.1.3 113466,113467 2odjA 428 1.028 1an8 208 1.219 2f1cX 286 2.460 2iwvA 281 3.135 1qd6C 240 3.800 2dpyA 438 4.273 1e3dB 542 5.647 e.18.1.1 59189 1jetA 517 6.107 c.94.1.1 35718 2j4xA 213 8.162 2a2cA 478 9.175 1ar61 302 11.18 1r1a1 287 11.45 1fnuA 221 11.64 b.40.2.2,d.15.6.1 25212,37801 1enfA 212 13.71 b.40.2.2,d.15.6.1 25198,37787 1et9A 204 18.07 b.40.2.2,d.15.6.1 25204,37793 1k0eA 453 24.94 d.161.1.1 67938 1tyv 542 25.36 1q15A 503 28.25 c.26.2.1,d.153.1.1 95538,95539 2qv3A 457 30.22 2ervA 150 32.52 1jz8A 1023 32.94 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1bu8A 452 33.69 b.12.1.2,c.69.1.19 23647,34795 2bjqA 345 35.37 b.169.1.1,b.169.1.1 128626,128627 1tjcA 108 39.92 a.118.8.1 112440 1owcA 427 42.76 a.103.1.1 104039 1l7aA 318 43.99 c.69.1.25 77772 1aym1 285 45.05 1vjuA 309 45.14 d.248.1.1 100835 1ztpA 251 47.90 d.86.1.2 125649 2i7vA 459 48.22 1al21 302 48.25 1ar71 302 51.43 2ckfA 454 51.63 2jqyA 280 54.16 2h7jA 220 54.97 d.3.1.1 136216 2v24A 208 55.45 2ib5A 233 56.16 1ukgA 252 56.28 b.29.1.1 99489 1zx5A 300 57.01 b.82.1.3 125763 1w7cA 747 58.95 1lam 484 59.08 2zb6A 481 62.69 1g8lA 411 63.21 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1xocA 520 63.88 c.94.1.1 122201 1xpmA 396 65.86 c.95.1.2,c.95.1.2 115759,115760 1gppA 237 67.02 b.86.1.2 76262 1csh 435 67.11 1gpr 162 67.56 1hplA 449 67.60 b.12.1.2,c.69.1.19 23639,34787 1d8hA 311 68.96 d.63.1.1 39544 1w6gA 646 72.56 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2c42A 1231 74.75 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2dddA 225 76.45 1n1tA 641 77.20 b.29.1.15,b.68.1.1 79821,79822 1mzyA 333 78.30 b.6.1.3,b.6.1.3 103848,103849 1mc0A 368 79.30 d.110.2.1,d.110.2.1 78937,78938 1yreA 197 79.82 d.108.1.1 123919 1xkgA 312 79.84 d.3.1.1 122081 1y3nA 490 80.43 c.94.1.1 122597 2c61A 469 81.69 1yk3A 210 83.40 d.108.1.1 123493 2p17A 277 86.90 1h8eA 510 87.52 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2az4A 429 88.36 d.157.1.10 127597 2hqyA 305 88.68 1hxs1 302 88.94 2i71A 400 89.17