# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 9.03e-33 f.4.3.1 133439 2j1nA 346 7.77e-32 1hxxA 340 2.79e-31 f.4.3.1 61385 2porA 301 3.23e-30 f.4.3.1 43759 2por 301 1.87e-29 3prnA 289 3.03e-25 f.4.3.1 43761 3prn 289 1.37e-24 2o4vA 411 7.25e-10 2gufA 594 0.05868 f.4.3.3 135736 1nqeA 594 0.08910 f.4.3.3 86027 1t16A 427 0.1339 f.4.3.4 106242 2mprA 421 2.071 f.4.3.2 43788 1an8 208 2.142 2hdiA 639 3.447 1q15A 503 3.515 c.26.2.1,d.153.1.1 95538,95539 1xkwA 665 4.588 2mev1 277 7.743 1fepA 724 7.785 f.4.3.3 43808 2a2cA 478 8.746 1e3dB 542 9.088 e.18.1.1 59189 2odjA 428 10.25 1a0tP 413 10.46 f.4.3.2 43794 1l3sA 580 12.12 c.55.3.5,e.8.1.1 84521,84522 2h7jA 220 16.01 d.3.1.1 136216 1jkmA 358 17.62 c.69.1.2 34633 1ppoA 216 17.81 d.3.1.1 37020 1m6dA 214 19.35 d.3.1.1 84849 1p4tA 155 19.63 f.4.1.1 87779 2btoA 473 19.71 2p86A 215 20.96 2hnhA 910 21.92 1tyv 542 23.23 1xkgA 312 23.63 d.3.1.1 122081 1bu8A 452 24.24 b.12.1.2,c.69.1.19 23647,34795 1ztxE 108 25.23 b.1.18.4 125658 1r62A 160 25.49 d.122.1.3 104816 2iciA 227 27.73 2qv3A 457 28.37 1tu6A 215 29.35 d.3.1.1 107318 2dpyA 438 31.21 2ip1A 432 32.38 1hplA 449 34.47 b.12.1.2,c.69.1.19 23639,34787 2ppvA 332 34.57 1owcA 427 34.71 a.103.1.1 104039 1kmoA 774 34.90 f.4.3.3 72753 1repC 251 35.57 a.4.5.10,a.4.5.10 16125,16126 2qzuA 491 35.58 1hzfA 367 35.65 a.102.4.4 76731 1fnuA 221 36.24 b.40.2.2,d.15.6.1 25212,37801 2v5iA 559 36.62 1x9mA 698 38.21 c.55.3.5,e.8.1.1 114999,115000 1epwA 1290 40.55 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2v24A 208 42.56 1qfgA 725 45.19 f.4.3.3 43803 2e58A 308 45.75 2hhvA 580 48.44 c.55.3.5,e.8.1.1 136514,136515 1qj8A 148 48.50 f.4.1.1 43744 1jetA 517 48.52 c.94.1.1 35718 1to3A 304 49.07 c.1.10.1 107161 1zx5A 300 49.20 b.82.1.3 125763 1ty0A 211 49.53 b.40.2.2,d.15.6.1 107440,107441 1u4bA 580 51.01 c.55.3.5,e.8.1.1 107664,107665 1dbiA 280 51.68 c.41.1.1 32543 2ddfA 257 54.25 1v0eA 666 54.33 b.68.1.2,b.108.1.3 113466,113467 1yk3A 210 57.05 d.108.1.1 123493 2olsA 794 57.64 1c8cA 64 58.22 b.34.13.1 59084 1vrbA 342 59.55 b.82.2.11 120450 1wraA 308 60.90 d.157.1.8 121190 2actA 220 60.99 d.3.1.1 37002 2f7tA 227 61.03 1me4A 215 61.78 d.3.1.1 79023 2cjqA 720 63.23 1w7cA 747 65.11 2grvA 621 66.23 1enfA 212 66.40 b.40.2.2,d.15.6.1 25198,37787 1zy9A 564 67.53 b.30.5.11,c.1.8.13 125813,125814 1lmlA 478 68.73 d.92.1.3 40295 1h2kA 349 70.89 b.82.2.6 76572 2r98A 456 72.79 1et9A 204 72.87 b.40.2.2,d.15.6.1 25204,37793 2pe3A 354 75.04 1txjA 171 75.60 b.88.1.2 107424 2kfnA 605 76.87 c.55.3.5,e.8.1.1 33682,42975 2ckfA 454 79.34 1ubkL 534 79.81 e.18.1.1 88422 1i78A 297 80.46 f.4.4.1 66046 3bb0A 609 80.50 2v73A 191 81.31 2q9uA 414 83.08 1yreA 197 83.10 d.108.1.1 123919 1n1tA 641 84.55 b.29.1.15,b.68.1.1 79821,79822 1w85B 324 86.32 c.36.1.7,c.48.1.2 114336,114337 1iwdA 215 87.09 d.3.1.1 83756 2csuA 457 87.80 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1tjcA 108 88.40 a.118.8.1 112440 1aa7A 158 89.45 a.95.1.1 18741 1j1nA 492 89.97 c.94.1.1 83978