# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.66e-34 f.4.3.1 133439 2j1nA 346 7.48e-34 1hxxA 340 3.27e-32 f.4.3.1 61385 2porA 301 7.31e-31 f.4.3.1 43759 2por 301 2.40e-29 3prnA 289 2.74e-27 f.4.3.1 43761 3prn 289 1.35e-26 2o4vA 411 9.89e-14 1t16A 427 2.99e-05 f.4.3.4 106242 2gufA 594 0.000248 f.4.3.3 135736 2mprA 421 0.000302 f.4.3.2 43788 1fepA 724 0.001148 f.4.3.3 43808 1a0tP 413 0.001428 f.4.3.2 43794 1nqeA 594 0.004851 f.4.3.3 86027 1xkwA 665 0.01417 1kmoA 774 0.04820 f.4.3.3 72753 2hdiA 639 0.09912 1qjpA 171 0.1708 f.4.1.1 43742 1qj8A 148 0.2417 f.4.1.1 43744 1p4tA 155 0.2959 f.4.1.1 87779 1qfgA 725 0.3092 f.4.3.3 43803 2odjA 428 0.5362 1tyv 542 1.181 2mev1 277 1.311 2f1vA 197 1.349 2dpyA 438 1.609 1bu8A 452 4.856 b.12.1.2,c.69.1.19 23647,34795 1w6gA 646 6.170 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1qd6C 240 7.039 1pxzA 346 7.221 b.80.1.1 111643 2e4tA 519 8.725 2iwvA 281 9.036 1v7wA 807 10.90 a.102.1.4,b.30.5.3 108411,108412 2jdiA 510 12.43 1w7cA 747 12.83 1z5vA 474 13.41 1k0eA 453 13.94 d.161.1.1 67938 1r1a1 287 14.36 1fnuA 221 14.86 b.40.2.2,d.15.6.1 25212,37801 2c61A 469 17.44 2a2cA 478 17.53 1i78A 297 18.03 f.4.4.1 66046 2j4xA 213 18.37 2hldD 478 18.59 1jetA 517 18.65 c.94.1.1 35718 2f1cX 286 19.49 2ebsA 789 19.52 2e26A 725 20.11 2qv3A 457 22.06 2ac1A 541 22.44 2i7vA 459 22.65 1h8eA 510 23.09 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2d3aA 356 24.41 1an8 208 24.50 1vr5A 547 24.73 c.94.1.1 120437 1yq2A 1024 25.53 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2oblA 347 27.43 1accA 735 27.88 f.11.1.1 43828 2odlA 373 28.62 1g8lA 411 32.07 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1d8hA 311 32.78 d.63.1.1 39544 1bf2A 750 33.12 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1e3dB 542 35.08 e.18.1.1 59189 1j09A 468 36.18 a.97.1.1,c.26.1.1 77025,77026 2cduA 452 36.88 2a6hD 1524 38.20 e.29.1.2 126265 1nekA 588 39.33 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1enfA 212 40.77 b.40.2.2,d.15.6.1 25198,37787 1hwxA 501 43.62 c.2.1.7,c.58.1.1 30250,33898 2qm1A 326 49.17 1ztpA 251 49.64 d.86.1.2 125649 2jd4A 383 53.33 2ckfA 454 53.47 1ar61 302 56.22 1l7aA 318 57.08 c.69.1.25 77772 1j7jA 178 57.81 c.61.1.1 84131 1tu5A 746 60.94 2gpjA 252 61.05 1tyvA 554 61.42 b.80.1.6 28038 1kblA 873 62.18 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1et9A 204 62.38 b.40.2.2,d.15.6.1 25204,37793 2hd9A 145 63.69 3cddA 361 64.99 2qngA 199 66.25 1yreA 197 67.02 d.108.1.1 123919 1h54A 754 67.29 a.102.1.4,b.30.5.3 60634,60635 2jqyA 280 69.93 2ojwA 384 70.62 3bixA 574 71.23 2gxfA 142 71.25 2uurA 245 72.59 1ju2A 536 74.41 c.3.1.2,d.16.1.1 77169,77170 1kwgA 645 75.92 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1gppA 237 75.99 b.86.1.2 76262 1rjoA 646 76.36 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 2bjqA 345 77.61 b.169.1.1,b.169.1.1 128626,128627 1hdhA 536 78.10 c.76.1.2 65805 1n9eA 787 78.33 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1m1cA 680 79.00 e.42.1.1 78395 2g3mA 693 80.07 1sesA 421 81.12 a.2.7.1,d.104.1.1 15710,40710 1tuoA 464 82.01 1qhtA 775 82.61 c.55.3.5,e.8.1.1 33722,43011 1fsuA 492 83.93 c.76.1.2 35032 2f7lA 455 84.69 1ztxE 108 84.70 b.1.18.4 125658 2ddfA 257 87.55 2cxaA 256 87.77 d.108.1.6 130993 2ervA 150 88.90