# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 4.07e-37 f.4.3.1 133439 2j1nA 346 1.79e-36 1hxxA 340 1.89e-35 f.4.3.1 61385 2porA 301 2.34e-33 f.4.3.1 43759 2por 301 1.12e-32 3prnA 289 4.76e-29 f.4.3.1 43761 3prn 289 1.71e-28 2o4vA 411 4.23e-14 1t16A 427 9.16e-06 f.4.3.4 106242 2gufA 594 0.000372 f.4.3.3 135736 1nqeA 594 0.000789 f.4.3.3 86027 2mprA 421 0.000894 f.4.3.2 43788 1fepA 724 0.001003 f.4.3.3 43808 1a0tP 413 0.002403 f.4.3.2 43794 1xkwA 665 0.002860 1kmoA 774 0.01831 f.4.3.3 72753 2hdiA 639 0.04292 1qj8A 148 0.04888 f.4.1.1 43744 1p4tA 155 0.07483 f.4.1.1 87779 1qjpA 171 0.07583 f.4.1.1 43742 1qfgA 725 0.08297 f.4.3.3 43803 2mev1 277 0.2721 2odjA 428 0.3061 1i78A 297 0.3908 f.4.4.1 66046 2f1vA 197 0.4325 1v0eA 666 0.6090 b.68.1.2,b.108.1.3 113466,113467 1an8 208 3.227 1e3dB 542 3.392 e.18.1.1 59189 2dpyA 438 4.260 1qd6C 240 4.699 2j4xA 213 4.892 2iwvA 281 7.189 1r1a1 287 8.449 2f1cX 286 8.627 1epwA 1290 8.896 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1fnuA 221 11.69 b.40.2.2,d.15.6.1 25212,37801 1tyv 542 14.73 1ar61 302 14.95 1bf2A 750 15.39 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 2a2cA 478 16.12 1zx5A 300 25.13 b.82.1.3 125763 1enfA 212 25.21 b.40.2.2,d.15.6.1 25198,37787 1k0eA 453 26.15 d.161.1.1 67938 1jetA 517 31.59 c.94.1.1 35718 1et9A 204 31.71 b.40.2.2,d.15.6.1 25204,37793 1owcA 427 37.81 a.103.1.1 104039 1n1tA 641 38.21 b.29.1.15,b.68.1.1 79821,79822 1aym1 285 38.31 2ervA 150 39.65 1xpmA 396 41.72 c.95.1.2,c.95.1.2 115759,115760 1ukgA 252 41.73 b.29.1.1 99489 1vjuA 309 43.04 d.248.1.1 100835 1bu8A 452 43.23 b.12.1.2,c.69.1.19 23647,34795 2qv3A 457 43.54 1dhkB 223 44.57 b.29.1.1 24157 1d8hA 311 44.74 d.63.1.1 39544 1ztxE 108 44.90 b.1.18.4 125658 2bjqA 345 45.32 b.169.1.1,b.169.1.1 128626,128627 2uurA 245 47.54 1lam 484 49.72 2e26A 725 50.50 1w7cA 747 52.92 2sliA 679 55.67 b.29.1.9,b.68.1.1 24274,27611 1ar71 302 56.06 2h7jA 220 56.48 d.3.1.1 136216 2zb6A 481 56.77 1ztpA 251 56.81 d.86.1.2 125649 1csh 435 57.42 2ac1A 541 58.31 2ckfA 454 58.35 1yslA 402 59.08 1xkgA 312 60.07 d.3.1.1 122081 1al21 302 61.12 2jqyA 280 64.01 1g8lA 411 64.37 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 4dpvZ 584 64.53 b.121.5.2 23377 2c61A 469 65.12 2hqyA 305 66.14 2b02A 119 66.57 2hd9A 145 67.24 1hplA 449 69.52 b.12.1.2,c.69.1.19 23639,34787 1yk3A 210 70.42 d.108.1.1 123493 2bjrA 368 71.88 b.169.1.1,b.169.1.1 128628,128629 1vqzA 341 72.40 d.224.1.3,d.104.1.3 120426,120427 1w99A 558 74.01 3cq9A 227 74.04 1l7aA 318 74.58 c.69.1.25 77772 1sw5A 275 76.42 c.94.1.1 106069 1p4uA 153 76.49 b.1.10.2 87780 1ms9A 648 78.13 b.29.1.15,b.68.1.1 85088,85089 1jz8A 1023 79.57 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1txjA 171 83.06 b.88.1.2 107424 2p86A 215 83.67 1m4uA 206 85.61 g.17.1.7 78625 1gppA 237 86.39 b.86.1.2 76262 2ib5A 233 87.59 2c9oA 456 89.67