# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 4.87e-38 f.4.3.1 133439 2j1nA 346 8.91e-38 1hxxA 340 1.03e-36 f.4.3.1 61385 2porA 301 2.05e-34 f.4.3.1 43759 2por 301 1.30e-33 3prnA 289 6.28e-30 f.4.3.1 43761 3prn 289 2.86e-29 2o4vA 411 9.51e-14 1t16A 427 2.48e-05 f.4.3.4 106242 2gufA 594 0.000990 f.4.3.3 135736 2mprA 421 0.002183 f.4.3.2 43788 1nqeA 594 0.002224 f.4.3.3 86027 1a0tP 413 0.002610 f.4.3.2 43794 1fepA 724 0.003638 f.4.3.3 43808 1xkwA 665 0.01553 1kmoA 774 0.06095 f.4.3.3 72753 1qj8A 148 0.06666 f.4.1.1 43744 2hdiA 639 0.09571 1qjpA 171 0.1254 f.4.1.1 43742 1p4tA 155 0.1325 f.4.1.1 87779 1qfgA 725 0.2189 f.4.3.3 43803 2mev1 277 0.2539 1v0eA 666 0.3548 b.68.1.2,b.108.1.3 113466,113467 2f1vA 197 0.5410 1i78A 297 0.6632 f.4.4.1 66046 2odjA 428 0.9309 1an8 208 1.371 1e3dB 542 4.185 e.18.1.1 59189 2dpyA 438 4.613 2iwvA 281 6.576 1r1a1 287 7.351 1jetA 517 7.606 c.94.1.1 35718 1fnuA 221 7.636 b.40.2.2,d.15.6.1 25212,37801 2f1cX 286 8.386 1enfA 212 9.576 b.40.2.2,d.15.6.1 25198,37787 1qd6C 240 9.905 2j4xA 213 11.70 1tyv 542 12.96 1bu8A 452 17.43 b.12.1.2,c.69.1.19 23647,34795 2qv3A 457 17.91 1vjuA 309 19.60 d.248.1.1 100835 1lam 484 19.74 1ar61 302 20.66 2a2cA 478 20.91 1et9A 204 24.11 b.40.2.2,d.15.6.1 25204,37793 1owcA 427 25.79 a.103.1.1 104039 1epwA 1290 27.98 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1aym1 285 30.50 1csh 435 36.88 2ervA 150 38.16 1zx5A 300 38.87 b.82.1.3 125763 1hplA 449 39.36 b.12.1.2,c.69.1.19 23639,34787 1ar71 302 41.25 1ztpA 251 41.44 d.86.1.2 125649 1jz8A 1023 44.13 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1k0eA 453 45.39 d.161.1.1 67938 2bjqA 345 49.26 b.169.1.1,b.169.1.1 128626,128627 1dhkB 223 52.63 b.29.1.1 24157 2ib5A 233 52.83 2c9oA 456 54.20 2hqyA 305 55.98 1ukgA 252 56.29 b.29.1.1 99489 2oblA 347 56.65 2c61A 469 59.73 2p86A 215 60.44 1dfmA 223 62.28 c.52.1.5 33295 2zb6A 481 63.76 1dcsA 311 65.42 b.82.2.1 28124 2jqyA 280 66.43 1k7hA 476 69.05 c.76.1.1 72101 1l7aA 318 71.16 c.69.1.25 77772 1rq2A 382 71.24 c.32.1.1,d.79.2.1 105048,105049 2h7jA 220 71.70 d.3.1.1 136216 1mzyA 333 75.00 b.6.1.3,b.6.1.3 103848,103849 1xkgA 312 75.98 d.3.1.1 122081 2gpjA 252 77.37 1gl6A 436 77.53 c.37.1.11 70259 1a0iA 348 79.09 b.40.4.6,d.142.2.1 25363,41577 1n1tA 641 83.89 b.29.1.15,b.68.1.1 79821,79822 1m1cA 680 84.14 e.42.1.1 78395 1w7cA 747 86.03 1y3nA 490 86.44 c.94.1.1 122597 1al21 302 87.49 2i7vA 459 87.93 2hd9A 145 88.43 2dddA 225 89.23 3cq9A 227 89.24 2q7nA 488 89.46