# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.97e-38 f.4.3.1 133439 2j1nA 346 7.02e-38 1hxxA 340 5.64e-37 f.4.3.1 61385 2porA 301 1.58e-34 f.4.3.1 43759 2por 301 7.14e-34 3prnA 289 4.59e-30 f.4.3.1 43761 3prn 289 1.53e-29 2o4vA 411 6.10e-14 1t16A 427 1.26e-05 f.4.3.4 106242 2gufA 594 0.000260 f.4.3.3 135736 1fepA 724 0.000429 f.4.3.3 43808 1nqeA 594 0.000832 f.4.3.3 86027 1a0tP 413 0.001152 f.4.3.2 43794 2mprA 421 0.001570 f.4.3.2 43788 1xkwA 665 0.005034 1kmoA 774 0.02954 f.4.3.3 72753 2hdiA 639 0.03327 1qfgA 725 0.03784 f.4.3.3 43803 1p4tA 155 0.03854 f.4.1.1 87779 1qjpA 171 0.05428 f.4.1.1 43742 1qj8A 148 0.09640 f.4.1.1 43744 1i78A 297 0.2451 f.4.4.1 66046 2f1vA 197 0.2481 2mev1 277 0.3518 2odjA 428 0.4142 1v0eA 666 0.7820 b.68.1.2,b.108.1.3 113466,113467 1an8 208 1.548 2iwvA 281 2.603 1e3dB 542 3.421 e.18.1.1 59189 1jetA 517 3.728 c.94.1.1 35718 2f1cX 286 3.932 1qd6C 240 3.961 2dpyA 438 4.924 1bu8A 452 5.884 b.12.1.2,c.69.1.19 23647,34795 2a2cA 478 7.149 1fnuA 221 7.394 b.40.2.2,d.15.6.1 25212,37801 2qv3A 457 8.823 1k0eA 453 9.671 d.161.1.1 67938 1enfA 212 12.03 b.40.2.2,d.15.6.1 25198,37787 2ervA 150 13.43 2j4xA 213 13.99 1tyv 542 16.75 1vjuA 309 17.10 d.248.1.1 100835 1l7aA 318 17.18 c.69.1.25 77772 1r1a1 287 18.04 1hplA 449 22.39 b.12.1.2,c.69.1.19 23639,34787 1w7cA 747 27.15 1lam 484 27.18 1csh 435 35.69 1epwA 1290 36.47 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1ztpA 251 38.80 d.86.1.2 125649 3cq9A 227 40.68 1et9A 204 43.13 b.40.2.2,d.15.6.1 25204,37793 2p86A 215 45.90 1owcA 427 48.68 a.103.1.1 104039 2gpjA 252 48.87 2ddfA 257 52.41 1ar61 302 53.47 1rq2A 382 54.28 c.32.1.1,d.79.2.1 105048,105049 1w6gA 646 55.40 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2jqyA 280 58.34 1tjcA 108 59.25 a.118.8.1 112440 1xocA 520 60.10 c.94.1.1 122201 1gteA 1025 60.86 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2e26A 725 61.24 2e7uA 424 64.45 1cs1A 386 67.40 c.67.1.3 34399 1g8lA 411 68.16 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1lamA 484 69.54 c.50.1.1,c.56.5.3 33166,33829 2zb6A 481 70.88 2ppvA 332 71.11 1w2tA 432 72.18 b.29.1.19,b.67.2.3 120607,120608 1r62A 160 72.48 d.122.1.3 104816 1dhkB 223 75.24 b.29.1.1 24157 2v24A 208 76.73 2psoA 237 77.01 4dpvZ 584 77.66 b.121.5.2 23377 1mzyA 333 77.76 b.6.1.3,b.6.1.3 103848,103849 2bjqA 345 77.95 b.169.1.1,b.169.1.1 128626,128627 1wl7A 312 78.58 b.67.2.1 120996 2i5qA 415 79.28 2oblA 347 79.39 2nykA 285 80.33 1j09A 468 80.80 a.97.1.1,c.26.1.1 77025,77026 1ukgA 252 81.54 b.29.1.1 99489 1txjA 171 82.19 b.88.1.2 107424 2djkA 133 82.52 c.47.1.2 131548 2c61A 469 84.11 1dcsA 311 86.80 b.82.2.1 28124 1ztxE 108 88.51 b.1.18.4 125658