# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 5.15e-39 f.4.3.1 133439 2j1nA 346 1.21e-38 1hxxA 340 1.93e-37 f.4.3.1 61385 2porA 301 3.68e-35 f.4.3.1 43759 2por 301 2.17e-34 3prnA 289 8.22e-31 f.4.3.1 43761 3prn 289 3.17e-30 2o4vA 411 3.01e-14 1t16A 427 9.00e-06 f.4.3.4 106242 2gufA 594 0.000201 f.4.3.3 135736 1nqeA 594 0.000350 f.4.3.3 86027 1a0tP 413 0.000391 f.4.3.2 43794 2mprA 421 0.000821 f.4.3.2 43788 1fepA 724 0.000947 f.4.3.3 43808 1xkwA 665 0.005096 1kmoA 774 0.03640 f.4.3.3 72753 1p4tA 155 0.03984 f.4.1.1 87779 2hdiA 639 0.06651 1qjpA 171 0.07088 f.4.1.1 43742 1qj8A 148 0.09547 f.4.1.1 43744 2mev1 277 0.1154 1qfgA 725 0.1427 f.4.3.3 43803 1i78A 297 0.1899 f.4.4.1 66046 2f1vA 197 0.2228 2odjA 428 0.3142 1v0eA 666 0.4115 b.68.1.2,b.108.1.3 113466,113467 1an8 208 1.018 1e3dB 542 2.448 e.18.1.1 59189 1qd6C 240 2.785 1fnuA 221 3.130 b.40.2.2,d.15.6.1 25212,37801 2iwvA 281 4.960 1tyv 542 5.197 2dpyA 438 5.499 2f1cX 286 6.605 1r1a1 287 7.391 2j4xA 213 7.669 1bu8A 452 8.552 b.12.1.2,c.69.1.19 23647,34795 2qv3A 457 9.787 1enfA 212 10.59 b.40.2.2,d.15.6.1 25198,37787 2a2cA 478 11.36 1hplA 449 12.13 b.12.1.2,c.69.1.19 23639,34787 1ar61 302 14.89 1et9A 204 17.37 b.40.2.2,d.15.6.1 25204,37793 1jetA 517 22.46 c.94.1.1 35718 2ervA 150 23.18 2ac1A 541 26.31 1zx5A 300 28.46 b.82.1.3 125763 1csh 435 28.87 1lam 484 29.76 1vjuA 309 30.11 d.248.1.1 100835 1aym1 285 30.75 2bjqA 345 31.42 b.169.1.1,b.169.1.1 128626,128627 2jqyA 280 34.89 1ar71 302 36.83 1w6gA 646 37.11 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 3cq9A 227 37.88 1ztpA 251 38.47 d.86.1.2 125649 1k0eA 453 38.84 d.161.1.1 67938 1l7aA 318 38.92 c.69.1.25 77772 2hqyA 305 39.52 1gteA 1025 40.12 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2zb6A 481 40.68 1jz8A 1023 40.70 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1w7cA 747 41.18 1owcA 427 43.38 a.103.1.1 104039 2gpjA 252 45.85 2p86A 215 46.22 1w99A 558 47.35 2i1yA 301 48.90 2oblA 347 49.52 1n1tA 641 51.13 b.29.1.15,b.68.1.1 79821,79822 1rjoA 646 55.12 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 1epwA 1290 55.38 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2i7vA 459 56.61 2h7jA 220 56.80 d.3.1.1 136216 1xkgA 312 57.28 d.3.1.1 122081 1lamA 484 57.88 c.50.1.1,c.56.5.3 33166,33829 1ukgA 252 64.82 b.29.1.1 99489 1tyvA 554 70.15 b.80.1.6 28038 2ddfA 257 71.84 1g8lA 411 72.10 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1a0iA 348 73.59 b.40.4.6,d.142.2.1 25363,41577 1wl7A 312 73.76 b.67.2.1 120996 2g2uB 165 74.02 d.98.1.1 134541 2v24A 208 74.73 2ckfA 454 75.37 1r62A 160 75.37 d.122.1.3 104816 2p17A 277 75.61 2c61A 469 76.14 2bpa1 426 80.15 2bjrA 368 81.89 b.169.1.1,b.169.1.1 128628,128629 1n9eA 787 82.14 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1al21 302 82.53 1qcsA 211 84.13 b.52.2.3,d.31.1.1 26927,38461 1rq2A 382 84.54 c.32.1.1,d.79.2.1 105048,105049 1dhkB 223 84.71 b.29.1.1 24157 1jtgB 165 86.32 d.98.1.1 67267 2ppvA 332 86.57 2qzuA 491 87.60 2az4A 429 87.98 d.157.1.10 127597 2qjvA 270 88.09 2e26A 725 88.48 2ib5A 233 89.07 1txjA 171 89.54 b.88.1.2 107424