# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 3.01e-27 f.4.3.1 133439 2j1nA 346 5.71e-26 1hxxA 340 6.51e-26 f.4.3.1 61385 2porA 301 1.48e-24 f.4.3.1 43759 2por 301 5.79e-24 3prnA 289 8.08e-21 f.4.3.1 43761 3prn 289 2.61e-20 2o4vA 411 1.60e-09 1t16A 427 0.02970 f.4.3.4 106242 2gufA 594 0.6390 f.4.3.3 135736 2hdiA 639 1.388 1xkwA 665 1.549 1a0tP 413 1.862 f.4.3.2 43794 1nqeA 594 2.756 f.4.3.3 86027 2mprA 421 3.322 f.4.3.2 43788 1khbA 625 4.017 c.91.1.1,c.109.1.1 68606,68607 1qfgA 725 4.048 f.4.3.3 43803 1q15A 503 5.182 c.26.2.1,d.153.1.1 95538,95539 2a2cA 478 7.916 1tyv 542 9.165 2v5iA 559 12.75 1fepA 724 14.08 f.4.3.3 43808 1e3dB 542 14.87 e.18.1.1 59189 1vjjA 692 16.21 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1p4tA 155 16.30 f.4.1.1 87779 1l5aA 436 16.83 c.43.1.2,c.43.1.2 75923,75924 1g0dA 695 17.19 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1uvjA 664 18.07 e.8.1.6 100045 1epwA 1290 18.59 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2mev1 277 19.28 3cjpA 272 19.28 1tyvA 554 20.16 b.80.1.6 28038 1ubkL 534 20.43 e.18.1.1 88422 1ppoA 216 20.50 d.3.1.1 37020 1qj8A 148 22.77 f.4.1.1 43744 1ex0A 731 24.77 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2p86A 215 24.98 1qjpA 171 26.48 f.4.1.1 43742 1iq0A 592 26.73 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 1m6dA 214 32.83 d.3.1.1 84849 3b9wA 407 33.27 3bofA 566 33.90 2odjA 428 35.31 1x9mA 698 37.95 c.55.3.5,e.8.1.1 114999,115000 2f1vA 197 40.10 1wuiL 534 41.78 e.18.1.1 121289 1hzfA 367 42.91 a.102.4.4 76731 1wraA 308 43.42 d.157.1.8 121190 2dpyA 438 46.45 1reqA 727 46.76 c.1.19.1,c.23.6.1 29620,31247 1orvA 728 50.39 b.70.3.1,c.69.1.24 87354,87355 2b1mA 246 51.34 2jdiA 510 51.62 1cjcA 460 54.11 c.3.1.1,c.4.1.1 30319,30604 1y3nA 490 55.38 c.94.1.1 122597 2nt0A 497 55.53 b.71.1.2,c.1.8.3 138561,138562 2iufA 688 56.13 1xhcA 367 56.34 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1bu8A 452 57.78 b.12.1.2,c.69.1.19 23647,34795 2qv3A 457 58.81 2e9lA 469 61.42 1zthA 258 63.99 2eplX 627 64.26 1me4A 215 66.70 d.3.1.1 79023 1ddzA 496 68.43 c.53.2.1,c.53.2.1 33372,33373 1cs1A 386 68.67 c.67.1.3 34399 1yreA 197 70.04 d.108.1.1 123919 1f7uA 607 70.28 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1in6A 334 70.85 a.4.5.11,c.37.1.20 62601,62602 1xkgA 312 71.18 d.3.1.1 122081 2v3vA 723 71.55 2iciA 227 71.94 1wqaA 455 72.74 2z0xA 158 73.16 2h7jA 220 74.18 d.3.1.1 136216 1w85B 324 74.71 c.36.1.7,c.48.1.2 114336,114337 1to3A 304 75.74 c.1.10.1 107161 2zaiA 497 77.37 1iwdA 215 78.17 d.3.1.1 83756 2dfbA 190 78.99 b.29.1.11 131470 2po3A 424 82.77 1in4A 334 83.76 a.4.5.11,c.37.1.20 62597,62598 1yp2A 451 85.03 b.81.1.4,c.68.1.6 123798,123799 2jqyA 280 86.45 2ri9A 475 88.53 3b4wA 495 88.64