# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 7.73e-32 f.4.3.1 133439 2j1nA 346 2.47e-31 1hxxA 340 1.89e-30 f.4.3.1 61385 2porA 301 1.17e-28 f.4.3.1 43759 2por 301 7.06e-28 3prnA 289 6.16e-25 f.4.3.1 43761 3prn 289 1.81e-24 2o4vA 411 1.40e-10 1t16A 427 0.001063 f.4.3.4 106242 2gufA 594 0.01701 f.4.3.3 135736 1a0tP 413 0.02352 f.4.3.2 43794 2mprA 421 0.03976 f.4.3.2 43788 1fepA 724 0.07042 f.4.3.3 43808 1qjpA 171 0.1374 f.4.1.1 43742 1nqeA 594 0.1756 f.4.3.3 86027 1xkwA 665 0.2031 1qj8A 148 0.2373 f.4.1.1 43744 2hdiA 639 0.3865 1p4tA 155 1.170 f.4.1.1 87779 1e3dB 542 3.060 e.18.1.1 59189 2odjA 428 3.342 1kmoA 774 3.356 f.4.3.3 72753 2mev1 277 4.686 2f1vA 197 6.468 2p86A 215 9.468 1xkgA 312 9.815 d.3.1.1 122081 1m6dA 214 11.73 d.3.1.1 84849 1xpmA 396 13.57 c.95.1.2,c.95.1.2 115759,115760 2dpyA 438 13.81 1d8hA 311 14.21 d.63.1.1 39544 2jqyA 280 14.89 2v73A 191 17.79 1qfgA 725 19.64 f.4.3.3 43803 1y3nA 490 19.79 c.94.1.1 122597 2is6A 680 19.81 1r6xA 395 20.40 b.122.1.3,c.26.1.5 97167,97168 2h7jA 220 20.76 d.3.1.1 136216 1ar61 302 23.11 2c61A 469 23.19 1tu6A 215 23.80 d.3.1.1 107318 1an8 208 25.58 2qv3A 457 25.75 1dbiA 280 25.84 c.41.1.1 32543 1jetA 517 27.31 c.94.1.1 35718 1qd6C 240 29.32 2p5zX 491 29.37 1tyv 542 33.22 2bjqA 345 33.34 b.169.1.1,b.169.1.1 128626,128627 1gdeA 389 34.03 c.67.1.1 60456 1sesA 421 34.23 a.2.7.1,d.104.1.1 15710,40710 1yslA 402 35.99 1r62A 160 36.51 d.122.1.3 104816 2qj8A 332 38.72 1zl0A 311 38.82 c.8.10.1,c.23.16.7 125231,125232 3cddA 361 39.24 1me4A 215 40.95 d.3.1.1 79023 1kmkA 406 41.87 c.67.1.3 68696 1zx5A 300 43.25 b.82.1.3 125763 1al21 302 43.71 1olrA 224 46.02 b.29.1.11 93330 2djlA 314 46.63 1qw9A 502 46.84 b.71.1.2,c.1.8.3 96466,96467 2dfbA 190 49.01 b.29.1.11 131470 1a8d 452 50.39 2fb9A 322 51.34 2f1cX 286 52.08 2iciA 227 52.43 1ppoA 216 53.03 d.3.1.1 37020 2rb7A 364 55.01 1yreA 197 57.64 d.108.1.1 123919 2bw8A 227 60.02 b.29.1.11 129324 1wb4A 297 60.26 c.69.1.2 120827 1l5aA 436 60.30 c.43.1.2,c.43.1.2 75923,75924 2qngA 199 60.42 2ppvA 332 60.46 1fh0A 221 63.02 d.3.1.1 59832 2cy7A 396 64.43 2hglA 136 65.92 3c2qA 345 66.55 2pb2A 420 66.91 1a0iA 348 68.08 b.40.4.6,d.142.2.1 25363,41577 2z0xA 158 70.50 2cu9A 161 71.19 1hi9A 274 72.19 c.99.1.1 61063 1epwA 1290 73.41 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2q9uA 414 75.63 2nlrA 234 76.34 b.29.1.11 24344 1ynaA 194 77.76 b.29.1.11 24335 2v24A 208 80.36 2eh6A 375 80.73 1h8eA 510 81.44 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 3c1jA 424 81.55 1rocA 155 81.60 b.1.22.1 97673 1i31A 314 82.13 b.2.7.1 22481 1i78A 297 84.69 f.4.4.1 66046 2vgdA 218 85.32 2p17A 277 86.36 1iktA 120 87.07 d.106.1.1 66188 1hzfA 367 87.42 a.102.4.4 76731 1cc1L 498 88.00 e.18.1.1 43301