# List of top-scoring protein chains for T0403.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 2.74e-24 f.4.3.1 133439 2fgrA 332 3.77e-24 f.4.3.1 133440 1osmA 342 4.70e-24 f.4.3.1 43769 1phoA 330 5.31e-24 f.4.3.1 43758 2ixwA 343 1.22e-23 2omfA 340 2.26e-23 f.4.3.1 43749 1hxuA 340 2.41e-23 f.4.3.1 61384 2j1nA 346 2.44e-23 1hxxA 340 2.45e-23 f.4.3.1 61385 1bt9A 340 2.60e-23 f.4.3.1 43756 1mpfA 340 3.09e-23 f.4.3.1 43752 1gfpA 340 4.18e-23 f.4.3.1 43750 1gfoA 340 4.33e-23 f.4.3.1 43753 1gfmA 340 4.57e-23 f.4.3.1 43755 1gfqA 340 7.30e-23 f.4.3.1 43751 2ixxA 354 7.44e-23 1gfnA 334 3.48e-22 f.4.3.1 43754 1hxtA 340 1.03e-21 f.4.3.1 61383 2porA 301 0.001126 f.4.3.1 43759 2prnA 289 0.3290 f.4.3.1 43763 3prnA 289 0.4099 f.4.3.1 43761 1prnA 289 0.4178 f.4.3.1 43762 6prnA 289 0.4423 f.4.3.1 43765 7prnA 289 0.5016 f.4.3.1 43768 8prnA 289 0.5104 f.4.3.1 43767 1bh3A 289 0.5938 f.4.3.1 43766 5prnA 289 0.6458 f.4.3.1 43764 1h6s1 307 1.021 1p4tA 155 3.065 f.4.1.1 87779 1f74A 293 4.010 c.1.10.1 29079 2odjA 428 4.149 2iciA 227 4.901 1ma9A 458 7.096 a.126.1.1,a.126.1.1,a.126.1.1 78887,78888,78889 2o4vA 411 7.359 1kxpD 458 7.418 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1j78A 458 7.642 a.126.1.1,a.126.1.1,a.126.1.1 66397,66398,66399 1i78A 297 13.77 f.4.4.1 66046 2okxA 956 14.60 2dj0A 137 15.02 2hryA 603 17.94 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136704,136705,136706,136707 2hs3A 603 18.29 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1vk3A 615 18.69 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1by5A 714 23.77 f.4.3.3 43800 2d6mA 159 26.77 1vljA 407 26.81 e.22.1.2 108832 2d6oX 159 27.20 2fcpA 723 29.63 f.4.3.3 43802 1fcpA 705 29.74 f.4.3.3 43805 1w9iA 770 32.76 1w9jA 770 34.23 1w9kA 770 36.00 1yv3A 762 36.35 1w9lA 770 36.59 1mmaA 762 37.12 b.34.3.1,c.37.1.9 24587,32184 2akaA 776 37.54 1jx2A 776 38.00 b.34.3.1,c.37.1.9 67402,67403 1d0yA 761 38.30 b.34.3.1,c.37.1.9 24581,32178 1qfgA 725 39.41 f.4.3.3 43803 1fi1A 707 39.56 f.4.3.3 59844 2b3rA 134 44.88 1fmvA 761 47.51 b.34.3.1,c.37.1.9 24580,32177 2qntA 141 50.37 1mmnA 762 51.34 b.34.3.1,c.37.1.9 24582,32179 1j7xA 302 51.50 c.14.1.2 66425 1vzoA 355 51.60 d.144.1.7 108971 1k8tA 510 52.12 e.41.1.1 68316 1vomA 762 52.44 b.34.3.1,c.37.1.9 24577,32174 1pk0A 507 52.75 e.41.1.1 94795 1g8xA 1010 61.89 k.1.1.1 46378 2p7iA 250 64.40 2atmA 331 68.73 1lvkA 762 69.74 b.34.3.1,c.37.1.9 24576,32173 1uxvA 501 70.33 c.82.1.1 108127 1mmgA 762 73.24 b.34.3.1,c.37.1.9 24579,32176 1uxtA 501 73.63 c.82.1.1 108125 1mp4A 292 75.03 c.68.1.6 79376 1h5rB 293 75.26 c.68.1.6 65624 2fp4B 395 76.03 c.23.4.1,d.142.1.4 133897,133898 1eudB 396 76.24 c.23.4.1,d.142.1.4 31150,41571 1h5rA 293 77.70 c.68.1.6 65623 2b25A 336 78.03 c.66.1.13 127699 1h5sD 293 81.02 c.68.1.6 65630 3c5iA 369 84.39 1nqfA 594 84.90 f.4.3.3 86028 2j62A 594 87.90 1g6hA 257 89.65 c.37.1.12 60318