# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	6.65e-34	f.4.3.1	59258
2fgqX	332	1.32e-33	f.4.3.1	133439
2j1nA	346	1.87e-32		
1hxxA	340	3.09e-32	f.4.3.1	61385
2omf	340	9.36e-32		
2porA	301	2.13e-30	f.4.3.1	43759
2por	301	9.10e-28		
3prn	289	4.06e-26		
3prnA	289	1.81e-25	f.4.3.1	43761
1prn	289	4.06e-11		
2o4vA	411	7.64e-11		
1t16A	427	0.001960	f.4.3.4	106242
1fepA	724	0.003705	f.4.3.3	43808
1qfgA	725	0.04412	f.4.3.3	43803
2gufA	594	0.09043	f.4.3.3	135736
1nqeA	594	0.09125	f.4.3.3	86027
1kmoA	774	0.1004	f.4.3.3	72753
1qjpA	171	0.1154	f.4.1.1	43742
1po0A	751	0.1543	f.4.3.3	94960
2odjA	428	0.2257		
2f1vA	197	0.2623		
2mprA	421	0.3157	f.4.3.2	43788
1p4tA	155	0.3251	f.4.1.1	87779
1xkwA	665	0.4707		
2iwvA	281	2.272		
2hdiA	639	2.547		
2mev1	277	2.941		
1i78A	297	3.311	f.4.4.1	66046
2jqyA	280	3.509		
2f1cX	286	3.680		
1a0tP	413	4.011	f.4.3.2	43794
1xf1A	926	6.813		
2pb2A	420	11.32		
1py5A	326	13.55	d.144.1.7	104389
1qj8A	148	14.72	f.4.1.1	43744
1vjvA	415	15.65	d.3.1.9	108632
1vjyA	303	19.21	d.144.1.7	108633
3cgvA	397	21.05		
1pvc1	301	22.64		
1aym1	285	23.82		
1hxs1	302	28.89		
2eh6A	375	29.04		
2d6mA	159	29.43		
1pov1	302	29.81		
2cy8A	453	31.45		
1qg4A	216	31.74	c.37.1.8	32035
1v0eA	666	32.30	b.68.1.2,b.108.1.3	113466,113467
1a5t	334	33.75		
2p0mA	662	39.71		
1ux6A	350	43.19	b.29.1.16,g.75.1.1	100145,100146
2hp1A	432	45.77		
1gnyA	153	47.25	b.18.1.11	65404
1r1a1	287	47.63		
2g3fA	421	48.25		
2g3mA	693	48.44		
2hiqA	113	49.67	d.58.4.12	136529
2bwrA	401	51.63		
2hmcA	344	53.10		
2d1pB	119	55.62	c.114.1.1	131137
1al3	324	59.09		
1sxjE	354	60.35	a.80.1.1,c.37.1.20	106089,106090
2psoA	237	63.25		
1xbbA	291	66.71	d.144.1.7	115077
3blcA	330	69.75		
1fzqA	181	73.93	c.37.1.8	32060
2v73A	191	74.43		
1p16A	395	80.21	b.40.4.6,d.142.2.3	87661,87662
2fcr	173	82.61		
2q4kA	251	82.92	d.86.1.2	139864
2dduA	387	84.28		
1x88A	359	84.57	c.37.1.9	121797
1aym3	238	84.80		
1ncwL	219	84.87	b.1.1.1,b.1.1.2	85557,85558
3c8wA	255	85.67		
1hurA	180	87.61	c.37.1.8	32052