# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 4.89e-38 f.4.3.1 59258 2fgqX 332 1.74e-37 f.4.3.1 133439 2j1nA 346 1.18e-35 1hxxA 340 1.88e-35 f.4.3.1 61385 2omf 340 6.46e-35 2porA 301 1.95e-33 f.4.3.1 43759 2por 301 2.45e-30 3prn 289 3.61e-29 3prnA 289 2.11e-28 f.4.3.1 43761 1prn 289 6.32e-13 2o4vA 411 6.16e-12 1fepA 724 0.001428 f.4.3.3 43808 1t16A 427 0.001583 f.4.3.4 106242 1nqeA 594 0.006471 f.4.3.3 86027 2gufA 594 0.01099 f.4.3.3 135736 1kmoA 774 0.02412 f.4.3.3 72753 1po0A 751 0.04544 f.4.3.3 94960 1qfgA 725 0.05598 f.4.3.3 43803 2odjA 428 0.06674 1p4tA 155 0.1080 f.4.1.1 87779 1qjpA 171 0.1261 f.4.1.1 43742 1xkwA 665 0.1356 2iwvA 281 0.2458 2mprA 421 0.3600 f.4.3.2 43788 2f1vA 197 0.4136 2hdiA 639 0.4925 2f1cX 286 0.7094 1a0tP 413 0.7171 f.4.3.2 43794 1i78A 297 0.8071 f.4.4.1 66046 2jqyA 280 1.348 2pb2A 420 2.001 1oa2A 218 2.189 b.29.1.11 86721 2eh6A 375 3.855 2hp1A 432 4.375 1vjyA 303 4.446 d.144.1.7 108633 1h8vA 218 5.322 b.29.1.11 60795 2cy8A 453 5.525 1zgkA 308 6.732 1xf1A 926 7.198 2g3fA 421 7.428 2mev1 277 7.560 1gkpA 458 9.629 b.92.1.3,c.1.9.6 70231,70232 1qd6C 240 10.91 2gcuA 245 11.40 2r8cA 426 11.44 1qj8A 148 12.21 f.4.1.1 43744 2g3mA 693 12.26 1arbA 268 12.30 b.47.1.1 25766 3blcA 330 12.35 2ftwA 521 14.36 b.92.1.3,c.1.9.6 134083,134084 2nruA 307 14.36 1owqA 361 16.63 c.1.8.5,d.26.3.1 104041,104042 1t9fA 187 17.02 b.42.6.1 106710 1py5A 326 17.27 d.144.1.7 104389 1qd5A 275 20.13 f.4.2.1 43748 2pjzA 263 20.31 1t46A 313 20.32 d.144.1.7 106397 2qv3A 457 21.45 1f3zA 161 24.49 b.84.3.1 28273 2oodA 475 25.16 1v0eA 666 26.63 b.68.1.2,b.108.1.3 113466,113467 1vqzA 341 26.97 d.224.1.3,d.104.1.3 120426,120427 1jpaA 312 27.08 d.144.1.7 67011 2a7bA 120 27.24 b.1.10.2 126333 1zodA 433 30.69 c.67.1.4 125437 3cgvA 397 32.51 2d6mA 159 33.87 1k07A 263 34.10 d.157.1.1 77218 1aym1 285 36.47 2fh1A 344 37.39 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 2bjqA 345 38.19 b.169.1.1,b.169.1.1 128626,128627 1avbA 226 38.23 b.29.1.1 24158 1a5t 334 39.41 1iu1A 146 40.11 b.1.10.2 71428 2p9bA 458 40.51 2qs8A 418 44.84 2vpjA 301 44.96 1gyvA 120 46.63 b.1.10.2 70790 1ofzA 312 46.85 b.68.8.1 86978 1pov1 302 47.98 1jmxA 494 48.63 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2bwrA 401 48.64 1qh5A 260 49.50 d.157.1.2 42057 2ejoA 223 49.82 1pvc1 301 51.05 1kcxA 518 51.19 b.92.1.3,c.1.9.6 90953,90954 1xbbA 291 51.26 d.144.1.7 115077 1p4oA 322 51.98 d.144.1.7 87775 2fcr 173 52.25 3bs2A 148 53.48 1uypA 432 55.13 b.29.1.19,b.67.2.3 100176,100177 1p16A 395 55.26 b.40.4.6,d.142.2.3 87661,87662 2ddfA 257 55.56 1rylA 167 56.25 d.276.1.1 105124 1rk6A 496 56.27 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1vjvA 415 57.39 d.3.1.9 108632 2psoA 237 58.64 2j8qA 227 59.33 1m7jA 484 60.42 b.92.1.6,b.92.1.6,c.1.9.11 78732,78733,78734 1w2tA 432 61.41 b.29.1.19,b.67.2.3 120607,120608 2nqrA 411 62.31 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 3c8wA 255 62.88 1ubkL 534 65.05 e.18.1.1 88422 2d1pB 119 65.15 c.114.1.1 131137 2e7uA 424 66.50 1m4vA 204 69.76 b.40.2.2,d.15.6.1 74459,74460 1k2pA 263 69.88 d.144.1.7 72012 1yp1A 202 70.41 2bhuA 602 70.46 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 2obwA 258 71.90 1p2zA 968 72.62 b.121.2.2,b.121.2.2 93962,93963 2qedA 258 74.66 1xqaA 113 76.55 d.32.1.2 115837 1ejxC 567 77.46 b.92.1.1,c.1.9.2 83184,83185 2d4rA 147 78.73 d.129.3.6 131256 2bjkA 516 78.74 1ncwL 219 79.67 b.1.1.1,b.1.1.2 85557,85558 1zu0A 529 81.99 2z5wA 136 83.91 2p4mA 219 84.24 1an8 208 84.59 2h4vA 320 85.23 1knbA 196 85.84 b.21.1.1 23841 2i9uA 439 86.59 1a1x 108 87.54 2gmnA 274 88.17 2q4kA 251 89.55 d.86.1.2 139864