# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	4.63e-35	f.4.3.1	59258
2fgqX	332	1.72e-34	f.4.3.1	133439
2j1nA	346	1.29e-33		
1hxxA	340	3.66e-33	f.4.3.1	61385
2omf	340	1.06e-32		
2porA	301	3.40e-31	f.4.3.1	43759
2por	301	1.46e-28		
3prn	289	5.21e-27		
3prnA	289	2.72e-26	f.4.3.1	43761
1prn	289	2.52e-11		
2o4vA	411	3.78e-11		
1fepA	724	0.003781	f.4.3.3	43808
1t16A	427	0.01205	f.4.3.4	106242
1nqeA	594	0.04112	f.4.3.3	86027
1qjpA	171	0.05962	f.4.1.1	43742
1qfgA	725	0.06217	f.4.3.3	43803
1kmoA	774	0.06400	f.4.3.3	72753
1p4tA	155	0.06404	f.4.1.1	87779
1po0A	751	0.09630	f.4.3.3	94960
2gufA	594	0.1054	f.4.3.3	135736
2f1vA	197	0.2562		
2mprA	421	0.2981	f.4.3.2	43788
1xkwA	665	0.4707		
2odjA	428	0.6949		
2hdiA	639	1.411		
1a0tP	413	1.417	f.4.3.2	43794
2mev1	277	1.932		
1i78A	297	2.189	f.4.4.1	66046
2iwvA	281	2.237		
2f1cX	286	3.742		
1py5A	326	11.46	d.144.1.7	104389
1pov1	302	11.66		
1v0eA	666	12.49	b.68.1.2,b.108.1.3	113466,113467
1qj8A	148	13.11	f.4.1.1	43744
1xf1A	926	17.09		
3cgvA	397	17.53		
1pvc1	301	17.67		
1aym1	285	18.08		
2d6mA	159	18.76		
3blcA	330	20.66		
2gcuA	245	22.64		
1owqA	361	22.68	c.1.8.5,d.26.3.1	104041,104042
2eh6A	375	25.26		
2qz7A	194	25.96		
2hmcA	344	26.59		
1vjyA	303	27.88	d.144.1.7	108633
1vjvA	415	28.62	d.3.1.9	108632
1hxs1	302	31.77		
2g3fA	421	32.53		
1qd6C	240	33.18		
2q4kA	251	33.38	d.86.1.2	139864
1ux6A	350	35.94	b.29.1.16,g.75.1.1	100145,100146
1qg4A	216	36.86	c.37.1.8	32035
2jqyA	280	38.92		
2pb2A	420	39.03		
2hp1A	432	40.46		
1a5t	334	41.93		
2bwrA	401	42.88		
2psoA	237	47.58		
1an8	208	54.25		
1hurA	180	54.69	c.37.1.8	32052
1gkpA	458	55.33	b.92.1.3,c.1.9.6	70231,70232
2c9wA	169	55.64		
1r1a1	287	56.00		
1kcxA	518	57.36	b.92.1.3,c.1.9.6	90953,90954
2ftwA	521	58.20	b.92.1.3,c.1.9.6	134083,134084
1bkcE	256	62.61	d.92.1.10	40333
1aym3	238	63.50		
1xbbA	291	67.36	d.144.1.7	115077
2a7bA	120	69.56	b.1.10.2	126333
1hstA	90	69.92	a.4.5.13	16140
1uypA	432	71.97	b.29.1.19,b.67.2.3	100176,100177
1fzqA	181	73.54	c.37.1.8	32060
1mnnA	340	73.58	b.2.5.7	79324
1ty0A	211	73.98	b.40.2.2,d.15.6.1	107440,107441
1hnf	182	77.33		
1ztsA	139	77.43		
1kshA	186	78.03	c.37.1.8	72914
1zgkA	308	78.90		
1vlrA	350	79.21	d.13.1.3,d.246.1.1	108860,108861
1zgsA	447	80.36		
3bq3A	270	81.70		
1m4vA	204	82.61	b.40.2.2,d.15.6.1	74459,74460
2fcr	173	85.22		
2qv3A	457	85.25		
1rxxA	421	88.93	d.126.1.4	98061
1gnyA	153	89.80	b.18.1.11	65404