# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 3.22e-32 f.4.3.1 59258 2fgqX 332 1.56e-31 f.4.3.1 133439 1hxxA 340 9.24e-31 f.4.3.1 61385 2omf 340 1.85e-30 2j1nA 346 3.13e-30 2porA 301 2.18e-29 f.4.3.1 43759 2por 301 8.42e-27 3prn 289 4.85e-24 3prnA 289 3.80e-23 f.4.3.1 43761 1prn 289 1.13e-07 2o4vA 411 5.42e-07 2qtcA 886 2.492 1owqA 361 9.553 c.1.8.5,d.26.3.1 104041,104042 1uypA 432 10.38 b.29.1.19,b.67.2.3 100176,100177 1a5t 334 10.72 1oa2A 218 11.18 b.29.1.11 86721 1lmlA 478 11.31 d.92.1.3 40295 1k3tA 359 12.88 c.2.1.3,d.81.1.1 72022,72023 1ubkL 534 14.33 e.18.1.1 88422 2bjkA 516 14.77 2hmcA 344 18.96 1h8vA 218 19.50 b.29.1.11 60795 2ftwA 521 19.63 b.92.1.3,c.1.9.6 134083,134084 2g3fA 421 20.58 1py5A 326 20.87 d.144.1.7 104389 1gkpA 458 21.24 b.92.1.3,c.1.9.6 70231,70232 2okcA 445 22.59 2h7jA 220 25.89 d.3.1.1 136216 1v7wA 807 28.27 a.102.1.4,b.30.5.3 108411,108412 1jpaA 312 28.52 d.144.1.7 67011 3bf0A 593 28.68 1t16A 427 29.97 f.4.3.4 106242 2sqcA 631 30.00 a.102.4.2,a.102.4.2 18854,18855 3blcA 330 31.76 2qv3A 457 32.34 1fzqA 181 33.26 c.37.1.8 32060 2qs8A 418 33.57 2r5nA 669 34.23 1ixhA 321 34.28 c.94.1.1 35761 2pb2A 420 34.40 1mx0A 472 36.96 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1a8i 842 37.45 2fgeA 995 38.98 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1gpuA 680 39.61 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1oywA 523 40.21 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2pvuA 272 40.25 1hurA 180 40.77 c.37.1.8 32052 2cy8A 453 43.14 2r8oA 669 45.41 1kcxA 518 46.26 b.92.1.3,c.1.9.6 90953,90954 2odjA 428 48.69 2ieaA 886 49.15 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1oxwA 373 50.18 c.19.1.3 87539 2mev1 277 51.35 2yr5A 721 51.39 1in4A 334 52.31 a.4.5.11,c.37.1.20 62597,62598 2ddfA 257 52.68 3bs2A 148 56.03 2v5iA 559 57.06 2z8fA 412 59.00 1tyvA 554 59.08 b.80.1.6 28038 2r8cA 426 59.74 1g3qA 237 60.27 c.37.1.10 60237 2frqA 225 61.64 d.3.1.1 133999 1wl7A 312 64.57 b.67.2.1 120996 1zodA 433 64.61 c.67.1.4 125437 2d4rA 147 67.30 d.129.3.6 131256 1aa7A 158 68.01 a.95.1.1 18741 1uptA 171 69.24 c.37.1.8 99767 1bvoA 175 69.54 b.2.5.3 22457 1p1jA 533 70.63 c.2.1.3,d.81.1.3 87687,87688 1fepA 724 70.65 f.4.3.3 43808 1yi9A 309 70.94 b.121.1.2,b.121.1.2 123276,123277 1kshA 186 71.55 c.37.1.8 72914 2db3A 434 71.79 2f69A 261 72.46 b.76.2.1,b.85.7.1 133035,133036 1zgsA 447 72.82 1qg4A 216 73.37 c.37.1.8 32035 1sxjE 354 73.44 a.80.1.1,c.37.1.20 106089,106090 1x3sA 195 73.51 c.37.1.8 121670 1c2pA 576 73.92 e.8.1.4 43117 2bcgY 206 74.97 c.37.1.8 128285 1mr3F 181 75.54 c.37.1.8 79422 1tu6A 215 76.47 d.3.1.1 107318 1vjyA 303 78.99 d.144.1.7 108633 2eh6A 375 79.56 1ukcA 522 79.70 c.69.1.17 107911 1r4aA 165 79.71 c.37.1.8 96986 1vlpA 441 83.14 d.41.2.2,c.1.17.2 108840,108841 2v3vA 723 84.49