# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 1.20e-38 f.4.3.1 59258 2fgqX 332 3.20e-38 f.4.3.1 133439 2j1nA 346 8.39e-37 1hxxA 340 9.20e-37 f.4.3.1 61385 2omf 340 3.32e-36 2porA 301 1.62e-34 f.4.3.1 43759 2por 301 1.75e-31 3prn 289 1.41e-29 3prnA 289 8.36e-29 f.4.3.1 43761 1prn 289 1.73e-12 2o4vA 411 2.61e-12 1fepA 724 0.000884 f.4.3.3 43808 1t16A 427 0.002132 f.4.3.4 106242 1nqeA 594 0.008821 f.4.3.3 86027 2gufA 594 0.01815 f.4.3.3 135736 1kmoA 774 0.02192 f.4.3.3 72753 1qfgA 725 0.05387 f.4.3.3 43803 1qjpA 171 0.05971 f.4.1.1 43742 1po0A 751 0.06473 f.4.3.3 94960 1xkwA 665 0.09513 1p4tA 155 0.1052 f.4.1.1 87779 2f1vA 197 0.1238 2mprA 421 0.1820 f.4.3.2 43788 2odjA 428 0.3209 2hdiA 639 0.3951 1a0tP 413 0.5275 f.4.3.2 43794 1i78A 297 1.346 f.4.4.1 66046 2iwvA 281 1.699 2f1cX 286 1.726 2mev1 277 2.299 1v0eA 666 7.061 b.68.1.2,b.108.1.3 113466,113467 1qj8A 148 7.865 f.4.1.1 43744 1py5A 326 7.890 d.144.1.7 104389 1vjyA 303 10.27 d.144.1.7 108633 3blcA 330 10.52 3cgvA 397 11.17 1qd6C 240 12.05 2pb2A 420 13.33 1uypA 432 15.98 b.29.1.19,b.67.2.3 100176,100177 1qcxA 359 18.19 b.80.1.2 28028 2d6mA 159 18.31 1pov1 302 18.73 2g3fA 421 18.79 2jqyA 280 18.92 1aym1 285 23.46 1hxs1 302 27.30 1xf1A 926 28.79 1h8vA 218 28.81 b.29.1.11 60795 2eh6A 375 29.25 1gkpA 458 29.35 b.92.1.3,c.1.9.6 70231,70232 1vjvA 415 30.63 d.3.1.9 108632 2cy8A 453 31.35 2psoA 237 31.64 1pvc1 301 32.88 1owqA 361 34.37 c.1.8.5,d.26.3.1 104041,104042 2a7bA 120 34.44 b.1.10.2 126333 1qg4A 216 35.01 c.37.1.8 32035 2g3mA 693 40.04 1oa2A 218 40.27 b.29.1.11 86721 2gcuA 245 41.95 2hmcA 344 42.13 2hp1A 432 42.64 1xbbA 291 44.17 d.144.1.7 115077 1gnyA 153 44.79 b.18.1.11 65404 1oflA 481 46.37 b.80.1.4 103934 2c9wA 169 46.44 2d1pB 119 46.81 c.114.1.1 131137 1p2zA 968 47.06 b.121.2.2,b.121.2.2 93962,93963 1jmxA 494 48.31 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2hesX 330 48.91 1vjuA 309 49.59 d.248.1.1 100835 2v73A 191 51.59 2ftwA 521 51.64 b.92.1.3,c.1.9.6 134083,134084 2bwrA 401 51.70 1an8 208 52.23 2qz7A 194 52.72 2p0mA 662 54.34 2qv3A 457 57.87 1fzqA 181 58.05 c.37.1.8 32060 2hiqA 113 63.85 d.58.4.12 136529 1rxxA 421 64.80 d.126.1.4 98061 2gmnA 274 65.57 1k07A 263 66.60 d.157.1.1 77218 1ux6A 350 68.04 b.29.1.16,g.75.1.1 100145,100146 1mnnA 340 68.74 b.2.5.7 79324 2pcsA 162 69.97 1gt91 357 70.43 1qd5A 275 71.02 f.4.2.1 43748 1gyvA 120 71.75 b.1.10.2 70790 1iu1A 146 72.28 b.1.10.2 71428 1v7wA 807 73.81 a.102.1.4,b.30.5.3 108411,108412 1zgsA 447 73.95 1uptA 171 74.27 c.37.1.8 99767 1zgkA 308 74.59 2pjzA 263 75.28 1txnA 328 75.75 d.248.1.1 112779 1gprA 162 77.42 b.84.3.1 28267 1r1a1 287 77.56 1aym3 238 77.87 1al3 324 79.83 3bq3A 270 81.89 2d4rA 147 82.65 d.129.3.6 131256 1hurA 180 84.84 c.37.1.8 32052 2dduA 387 84.95 1txkA 498 85.05 b.1.18.2,b.30.5.9 107425,107426 2p18A 311 86.74 1h9dB 134 88.00 b.54.1.1 60822 1kshA 186 88.63 c.37.1.8 72914 1kcxA 518 89.32 b.92.1.3,c.1.9.6 90953,90954