# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	2.13e-32	f.4.3.1	59258
2fgqX	332	6.77e-32	f.4.3.1	133439
2omf	340	2.06e-30		
2j1nA	346	2.62e-30		
1hxxA	340	3.10e-30	f.4.3.1	61385
2porA	301	9.08e-29	f.4.3.1	43759
2por	301	1.45e-25		
3prn	289	9.37e-25		
3prnA	289	1.64e-24	f.4.3.1	43761
2o4vA	411	8.90e-12		
1prn	289	1.39e-10		
1t16A	427	0.000931	f.4.3.4	106242
1po0A	751	0.007513	f.4.3.3	94960
2gufA	594	0.03203	f.4.3.3	135736
2mprA	421	0.07132	f.4.3.2	43788
1fepA	724	0.07778	f.4.3.3	43808
2hdiA	639	0.1480		
1qjpA	171	0.1657	f.4.1.1	43742
1a0tP	413	0.1795	f.4.3.2	43794
1kmoA	774	0.2322	f.4.3.3	72753
1xkwA	665	0.2619		
1qfgA	725	0.3105	f.4.3.3	43803
1p4tA	155	0.6472	f.4.1.1	87779
2f1vA	197	0.7738		
2iwvA	281	2.202		
2odjA	428	3.145		
2f1cX	286	3.680		
1x88A	359	4.768	c.37.1.9	121797
2mev1	277	6.611		
1ox6A	555	7.209	c.1.2.1,c.23.16.1	87505,87506
2jqyA	280	7.255		
2e26A	725	8.385		
1abbA	828	9.261	c.87.1.4	35536
1aym1	285	9.682		
1i78A	297	11.72	f.4.4.1	66046
1oflA	481	13.03	b.80.1.4	103934
1tyvA	554	13.31	b.80.1.6	28038
1r1a1	287	13.95		
1nqeA	594	14.97	f.4.3.3	86027
1rxxA	421	15.89	d.126.1.4	98061
2z30A	320	19.29		
1sxjE	354	20.05	a.80.1.1,c.37.1.20	106089,106090
1qj8A	148	21.11	f.4.1.1	43744
1vjyA	303	22.23	d.144.1.7	108633
1gt91	357	22.32		
1py5A	326	23.92	d.144.1.7	104389
1ux6A	350	24.17	b.29.1.16,g.75.1.1	100145,100146
1hxs1	302	25.52		
1an8	208	26.43		
2a6hC	1119	27.08	e.29.1.1	126264
1vjvA	415	27.76	d.3.1.9	108632
2qz7A	194	27.96		
1xf1A	926	28.66		
2o8bA	934	29.05		
1uypA	432	29.37	b.29.1.19,b.67.2.3	100176,100177
1ygeA	839	29.88	a.119.1.1,b.12.1.1	19234,23634
1pov1	302	32.45		
2bg9A	370	33.38		
1r64A	481	33.42	b.18.1.20,c.41.1.1	97140,97141
1qd6C	240	33.57		
1qcxA	359	34.52	b.80.1.2	28028
1xdpA	687	37.24	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
1jmcA	246	40.00	b.40.4.3,b.40.4.3	25300,25301
2qv3A	457	40.66		
2q1fA	1022	42.65		
1hg8A	349	42.79	b.80.1.3	65830
2hldD	478	44.09		
1pvc1	301	44.29		
2gsoA	393	47.18		
1ykdA	398	48.34		
1h54A	754	50.15	a.102.1.4,b.30.5.3	60634,60635
1wu2A	396	50.93	b.85.6.1,b.103.1.1,c.57.1.2	114884,114885,114886
1ztpA	251	52.12	d.86.1.2	125649
1ncwL	219	53.97	b.1.1.1,b.1.1.2	85557,85558
3blcA	330	54.31		
2q4kA	251	55.19	d.86.1.2	139864
2jg2A	422	57.33		
2ip1A	432	58.66		
2psoA	237	58.69		
1arbA	268	61.06	b.47.1.1	25766
2pb2A	420	62.53		
2d1pB	119	64.27	c.114.1.1	131137
1avaA	403	64.85	b.71.1.1,c.1.8.1	27797,28784
3c2uA	538	66.76		
2yu1A	451	67.15		
1k3rA	268	67.48	b.40.4.10,c.116.1.2	72018,72019
2j0pA	345	68.78	e.62.1.1	137903
1hstA	90	70.60	a.4.5.13	16140
2ftwA	521	70.84	b.92.1.3,c.1.9.6	134083,134084
1aym3	238	73.27		
2ogtA	498	73.83		
2hmcA	344	74.52		
1tyv	542	75.28		
1qg4A	216	76.12	c.37.1.8	32035
1gpl	432	77.00		
2hzbA	333	80.14	c.143.1.1	136911
1koe	172	80.28		
1qpcA	279	80.75	d.144.1.7	41685
1yfsA	465	81.70	a.203.1.1,d.104.1.1	123088,123089
1x1iA	752	81.78	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
3cgvA	397	82.03		
2ojhA	297	84.06		
1ei6A	406	84.98	c.76.1.4	90443
1jz8A	1023	85.25	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
2oibA	301	86.87		
1bcoA	327	87.27	b.48.1.1,c.55.3.3	26431,33676
2fjbA	643	88.67		
1a1x	108	89.64