# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	1.86e-37	f.4.3.1	59258
2fgqX	332	8.14e-37	f.4.3.1	133439
2j1nA	346	1.05e-35		
1hxxA	340	1.34e-35	f.4.3.1	61385
2omf	340	4.61e-35		
2porA	301	2.80e-33	f.4.3.1	43759
2por	301	2.84e-30		
3prn	289	1.30e-28		
3prnA	289	8.53e-28	f.4.3.1	43761
1prn	289	2.35e-11		
2o4vA	411	7.14e-11		
1fepA	724	0.01123	f.4.3.3	43808
1t16A	427	0.01351	f.4.3.4	106242
1nqeA	594	0.1178	f.4.3.3	86027
2gufA	594	0.2102	f.4.3.3	135736
1kmoA	774	0.2127	f.4.3.3	72753
1qfgA	725	0.2267	f.4.3.3	43803
1qjpA	171	0.2313	f.4.1.1	43742
1p4tA	155	0.2613	f.4.1.1	87779
1po0A	751	0.6302	f.4.3.3	94960
2f1vA	197	0.7041		
2mprA	421	0.8896	f.4.3.2	43788
2odjA	428	1.457		
1a0tP	413	1.494	f.4.3.2	43794
1xkwA	665	1.982		
2mev1	277	2.205		
2hdiA	639	3.816		
2iwvA	281	5.227		
1i78A	297	5.890	f.4.4.1	66046
1v0eA	666	7.156	b.68.1.2,b.108.1.3	113466,113467
1py5A	326	10.72	d.144.1.7	104389
2f1cX	286	10.86		
1vjyA	303	10.94	d.144.1.7	108633
1qj8A	148	12.83	f.4.1.1	43744
1pov1	302	13.83		
2pb2A	420	15.44		
1vjvA	415	17.45	d.3.1.9	108632
2eh6A	375	18.46		
1xf1A	926	22.89		
1vjuA	309	23.68	d.248.1.1	100835
1oflA	481	26.12	b.80.1.4	103934
1aym1	285	29.25		
1qcxA	359	31.84	b.80.1.2	28028
2gcuA	245	32.01		
3cgvA	397	34.26		
1gt91	357	35.54		
2g3fA	421	35.63		
1zgkA	308	39.10		
1owqA	361	41.01	c.1.8.5,d.26.3.1	104041,104042
2hp1A	432	42.18		
1txnA	328	42.88	d.248.1.1	112779
1zodA	433	45.06	c.67.1.4	125437
1pvc1	301	45.17		
2p0mA	662	47.53		
1qg4A	216	47.60	c.37.1.8	32035
1hxs1	302	47.83		
3blcA	330	51.27		
2d6mA	159	52.06		
2qz7A	194	55.37		
1al3	324	55.43		
2jqyA	280	57.65		
2cy8A	453	61.16		
2fuvA	549	62.37		
2ddxA	333	63.34		
2d1pB	119	64.56	c.114.1.1	131137
2bwrA	401	64.80		
2bjkA	516	64.99		
2qv3A	457	66.60		
2nruA	307	67.25		
1gkpA	458	67.43	b.92.1.3,c.1.9.6	70231,70232
2a7bA	120	68.12	b.1.10.2	126333
1r1a1	287	73.45		
2fcr	173	76.27		
1hnf	182	76.36		
1bkcE	256	77.72	d.92.1.10	40333
2psoA	237	79.50		
1sxjE	354	79.55	a.80.1.1,c.37.1.20	106089,106090
2qtcA	886	79.82		
2q4kA	251	81.75	d.86.1.2	139864
1rxxA	421	84.52	d.126.1.4	98061
2c9wA	169	86.61		
3bq3A	270	86.83