# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e54A	332	1.15e-38	f.4.3.1	59258
2fgqX	332	5.33e-38	f.4.3.1	133439
1hxxA	340	1.66e-36	f.4.3.1	61385
2j1nA	346	1.66e-36		
2omf	340	4.72e-36		
2porA	301	7.97e-34	f.4.3.1	43759
2por	301	8.30e-31		
3prn	289	2.90e-29		
3prnA	289	1.80e-28	f.4.3.1	43761
1prn	289	1.11e-11		
2o4vA	411	2.65e-11		
1fepA	724	0.007411	f.4.3.3	43808
1t16A	427	0.01815	f.4.3.4	106242
1nqeA	594	0.05843	f.4.3.3	86027
2gufA	594	0.07793	f.4.3.3	135736
1p4tA	155	0.1539	f.4.1.1	87779
1kmoA	774	0.1727	f.4.3.3	72753
1po0A	751	0.2420	f.4.3.3	94960
1qjpA	171	0.2599	f.4.1.1	43742
1qfgA	725	0.2800	f.4.3.3	43803
2f1vA	197	0.4929		
1a0tP	413	0.7825	f.4.3.2	43794
1xkwA	665	1.129		
2hdiA	639	1.175		
2mprA	421	1.385	f.4.3.2	43788
2odjA	428	1.550		
2eh6A	375	3.239		
2pb2A	420	3.742		
1i78A	297	4.592	f.4.4.1	66046
2iwvA	281	5.698		
2mev1	277	5.787		
1vjyA	303	6.838	d.144.1.7	108633
1vjuA	309	8.622	d.248.1.1	100835
1py5A	326	8.640	d.144.1.7	104389
1txnA	328	11.49	d.248.1.1	112779
1vjvA	415	15.11	d.3.1.9	108632
1qj8A	148	15.36	f.4.1.1	43744
2f1cX	286	16.58		
1gt91	357	16.62		
1v0eA	666	16.82	b.68.1.2,b.108.1.3	113466,113467
2g3fA	421	18.11		
2hp1A	432	19.72		
1oa2A	218	20.86	b.29.1.11	86721
1owqA	361	22.16	c.1.8.5,d.26.3.1	104041,104042
2qv3A	457	26.94		
2gcuA	245	27.86		
1qg4A	216	27.96	c.37.1.8	32035
2fuvA	549	28.65		
1zodA	433	28.66	c.67.1.4	125437
2cy8A	453	28.66		
2p0mA	662	31.45		
2d1pB	119	31.86	c.114.1.1	131137
2psoA	237	33.61		
2r8cA	426	33.65		
1xf1A	926	36.41		
1qd6C	240	39.60		
2nruA	307	41.59		
1sxjE	354	44.88	a.80.1.1,c.37.1.20	106089,106090
2c9wA	169	45.44		
1h8vA	218	45.93	b.29.1.11	60795
1rxxA	421	47.57	d.126.1.4	98061
1gkpA	458	50.77	b.92.1.3,c.1.9.6	70231,70232
1arbA	268	51.05	b.47.1.1	25766
1kcxA	518	52.56	b.92.1.3,c.1.9.6	90953,90954
2ftwA	521	52.65	b.92.1.3,c.1.9.6	134083,134084
1fzqA	181	54.78	c.37.1.8	32060
1a5t	334	55.27		
1ur4A	399	56.06	c.1.8.3	113402
1jpaA	312	57.15	d.144.1.7	67011
1aym1	285	57.70		
2bjkA	516	58.77		
2fcr	173	61.79		
1hstA	90	61.86	a.4.5.13	16140
2qtcA	886	62.67		
1t15A	214	72.23	c.15.1.3,c.15.1.3	99067,99068
2e8bA	201	72.64		
3bq3A	270	73.72		
1al3	324	74.53		
1qcxA	359	76.57	b.80.1.2	28028
2a7bA	120	77.14	b.1.10.2	126333
2uy2A	294	77.61		
2is6A	680	80.42		
1cs1A	386	81.89	c.67.1.3	34399
2qs8A	418	83.60		
2ddxA	333	83.75		
3bs2A	148	84.47		
2ddfA	257	86.29		
1rylA	167	87.09	d.276.1.1	105124
2hmcA	344	87.62		
2qz7A	194	87.63		
1pov1	302	88.57		
1dtoA	221	89.11	b.91.1.1	28405
1zgkA	308	89.42		
1hurA	180	89.68	c.37.1.8	32052