# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 9.88e-30 f.4.3.1 59258 2fgqX 332 3.63e-29 f.4.3.1 133439 1hxxA 340 1.07e-27 f.4.3.1 61385 2omf 340 2.03e-27 2j1nA 346 1.11e-26 2porA 301 3.46e-26 f.4.3.1 43759 2por 301 7.41e-24 3prn 289 1.28e-21 3prnA 289 1.78e-21 f.4.3.1 43761 2o4vA 411 6.98e-08 1prn 289 1.42e-07 2qtcA 886 0.1888 1ubkL 534 0.2990 e.18.1.1 88422 2okcA 445 2.682 2ieaA 886 3.450 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1vefA 395 7.617 c.67.1.4 120018 1h5uA 842 8.432 c.87.1.4 60655 1t16A 427 9.838 f.4.3.4 106242 2r5nA 669 10.05 1in4A 334 11.61 a.4.5.11,c.37.1.20 62597,62598 2r8oA 669 12.07 1a5t 334 12.20 1oywA 523 12.72 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1a8i 842 12.77 1oa2A 218 13.07 b.29.1.11 86721 2eh6A 375 14.28 2cy8A 453 14.73 1h2rL 534 15.71 e.18.1.1 43298 1ox6A 555 16.40 c.1.2.1,c.23.16.1 87505,87506 1zgsA 447 16.94 1h8vA 218 17.24 b.29.1.11 60795 1zodA 433 18.61 c.67.1.4 125437 1oxwA 373 19.89 c.19.1.3 87539 1sffA 426 19.90 c.67.1.4 105482 1ddzA 496 22.44 c.53.2.1,c.53.2.1 33372,33373 2z8fA 412 24.69 1l8aA 886 25.85 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2e7uA 424 25.91 1in6A 334 26.42 a.4.5.11,c.37.1.20 62601,62602 2yykA 481 26.55 1bli 483 27.19 1ixhA 321 27.90 c.94.1.1 35761 2h7jA 220 27.91 d.3.1.1 136216 1cc1L 498 28.72 e.18.1.1 43301 1w2tA 432 31.23 b.29.1.19,b.67.2.3 120607,120608 2pb2A 420 31.64 1mp4A 292 32.37 c.68.1.6 79376 2f1vA 197 34.11 2bceA 585 34.42 c.69.1.1 34625 2epjA 434 36.69 2v5iA 559 37.54 2g3mA 693 40.17 2odjA 428 41.82 1qcwA 410 47.39 c.1.4.1 28622 2hp1A 432 47.61 1vcoA 550 48.44 c.23.16.1,c.37.1.10 108508,108509 1ta3B 303 48.95 c.1.8.3 106732 1r6xA 395 49.72 b.122.1.3,c.26.1.5 97167,97168 1e3dB 542 54.82 e.18.1.1 59189 2ozpA 345 55.43 3blcA 330 57.32 2obwA 258 59.08 3bv0A 437 59.25 1uypA 432 60.46 b.29.1.19,b.67.2.3 100176,100177 1sxjA 511 61.00 a.80.1.1,c.37.1.20 106081,106082 1ixh 321 61.59 1qg4A 216 62.32 c.37.1.8 32035 2frqA 225 63.10 d.3.1.1 133999 1nqeA 594 63.61 f.4.3.3 86027 1v7wA 807 64.32 a.102.1.4,b.30.5.3 108411,108412 2bwrA 401 65.26 1p1jA 533 66.35 c.2.1.3,d.81.1.3 87687,87688 1h3fA 432 70.15 c.26.1.1,d.66.1.4 76631,76632 1qmeA 702 70.73 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2z4sA 440 71.31 1k3tA 359 71.66 c.2.1.3,d.81.1.1 72022,72023 1ut9A 609 72.34 a.102.1.2,b.1.18.2 99912,99913 1j0dA 341 72.96 c.79.1.1 83902 1mxgA 435 73.24 b.71.1.1,c.1.8.1 85193,85194 1ukcA 522 73.40 c.69.1.17 107911 2zaiA 497 73.57 1tu6A 215 73.65 d.3.1.1 107318 1cs1A 386 74.65 c.67.1.3 34399 1vkhA 273 74.66 c.69.1.32 108662 1cjcA 460 75.96 c.3.1.1,c.4.1.1 30319,30604 1po0A 751 76.24 f.4.3.3 94960 1qw9A 502 78.72 b.71.1.2,c.1.8.3 96466,96467 1ush 550 79.14 1ez4A 318 80.45 c.2.1.5,d.162.1.1 64917,64918 1d7uA 433 82.80 c.67.1.4 34439 3b9wA 407 83.38 1zy9A 564 83.50 b.30.5.11,c.1.8.13 125813,125814 1vlpA 441 86.84 d.41.2.2,c.1.17.2 108840,108841 2p5sA 199 87.30 1wuiL 534 87.72 e.18.1.1 121289 1owqA 361 88.17 c.1.8.5,d.26.3.1 104041,104042 2cirA 297 89.91