# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e54A 332 1.66e-16 f.4.3.1 59258 2fgqX 332 3.27e-16 f.4.3.1 133439 1hxxA 340 3.81e-15 f.4.3.1 61385 2omf 340 4.78e-15 2j1nA 346 1.08e-13 2porA 301 5.00e-13 f.4.3.1 43759 2por 301 1.43e-11 3prn 289 1.31e-09 3prnA 289 2.61e-09 f.4.3.1 43761 1prn 289 7.15e-05 2o4vA 411 0.01343 1gntA 553 2.564 e.26.1.1 70290 2grvA 621 3.316 1zdyA 307 3.798 d.313.1.1 124961 1xocA 520 3.953 c.94.1.1 122201 2jenA 261 4.097 2nooA 502 4.962 2i0kA 561 6.252 1w1oA 534 7.628 d.58.32.4,d.145.1.1 109071,109072 1uqwA 509 7.984 c.94.1.1 99799 1yfsA 465 8.665 a.203.1.1,d.104.1.1 123088,123089 1zlqA 502 9.177 c.94.1.1 125253 1de4C 640 10.80 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 3bi1A 709 11.51 1a65A 504 12.66 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1p9qC 256 15.07 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1q2lA 939 17.84 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2r5vA 357 18.05 1bobA 320 18.84 d.108.1.1 40816 2c6cA 707 21.36 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 1c0pA 363 21.92 c.4.1.2,d.16.1.3 30647,37934 3bhxA 709 22.60 1t95A 240 23.18 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1hfuA 503 24.11 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1gnlA 544 24.70 e.26.1.1 70287 1vr5A 547 24.86 c.94.1.1 120437 1j83A 180 25.38 b.18.1.12 66430 1hr6B 443 25.57 d.185.1.1,d.185.1.1 61166,61167 1un8A 552 26.31 c.119.1.2,a.208.1.1 103806,99661 2b5oA 402 27.30 1i19A 561 28.39 d.58.32.3,d.145.1.1 61522,61523 2or4A 709 30.43 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 1zu0A 529 31.42 1ykwA 435 31.69 c.1.14.1,d.58.9.1 123565,123566 2bbdA 350 34.63 1yi9A 309 34.75 b.121.1.2,b.121.1.2 123276,123277 2mev1 277 35.91 2htaA 309 36.53 2o62A 270 40.92 2zaiA 497 42.85 1hx6A 394 43.21 b.121.2.1,b.121.2.1 58995,58996 2camA 127 44.98 b.61.1.1 27407 1cc1L 498 46.91 e.18.1.1 43301 2e8yA 718 47.30 1uiuA 502 47.58 c.94.1.1 99434 2cirA 297 47.77 1phm 310 49.85 2qsvA 220 50.23 1t16A 427 50.72 f.4.3.4 106242 1dpeA 507 50.84 c.94.1.1 35799 1ffyA 917 53.13 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1nk4A 580 54.07 c.55.3.5,e.8.1.1 91923,91924 1lvoA 302 55.03 b.47.1.4 74284 1e8gA 560 55.34 d.58.32.1,d.145.1.1 39455,41718 1t3qB 788 55.92 d.41.1.1,d.133.1.1 106369,106370 1xdiA 499 56.19 c.3.1.5,d.87.1.1 115160,115161 2ivsA 314 56.37 2ny1B 184 58.41 b.1.1.1,b.1.1.3 138764,138765 2bylA 439 60.08 c.67.1.4 129490 1oa2A 218 60.19 b.29.1.11 86721 1rv9A 259 60.97 d.194.1.2 105105 1zxiB 809 62.33 d.41.1.1,d.133.1.1 125774,125775 1r17A 343 63.59 b.2.3.4,b.2.3.4 96796,96797 1ut9A 609 63.75 a.102.1.2,b.1.18.2 99912,99913 2f5vA 595 63.98 c.3.1.2,d.16.1.1 133010,133011 1dleA 298 64.09 b.47.1.2 26312 1bob 320 64.69 1bqsA 209 65.94 b.1.1.4,b.1.1.4 21704,21705 1b65A 375 67.20 d.154.1.1 42020 1thmA 279 67.45 c.41.1.1 32544 2dduA 387 67.86 1p9bA 442 69.40 c.37.1.10 94385 1sffA 426 71.07 c.67.1.4 105482 1vjjA 692 73.34 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1vheA 373 73.49 b.49.3.1,c.56.5.4 100669,100670 1brmA 367 73.87 c.2.1.3,d.81.1.1 30030,39945 1z02A 446 74.21 1h30A 422 74.21 b.29.1.4,b.29.1.4 76604,76605 2g47A 990 75.38 2df7A 458 75.54 b.121.4.9 131449 1nqnA 122 77.12 b.61.1.1 86042 2ok8A 316 77.53 2ek8A 421 78.75 1l3sA 580 81.21 c.55.3.5,e.8.1.1 84521,84522 2dqsA 995 82.15 2hhvA 580 82.72 c.55.3.5,e.8.1.1 136514,136515 2aq4A 434 83.79 2b0aA 186 84.24 c.8.8.1 127632 2j58A 359 84.39 2byjA 439 84.83 c.67.1.4 129483 5rubA 490 85.31 c.1.14.1,d.58.9.1 29382,39288 2je6B 250 85.55 1kb9B 352 85.79 d.185.1.1,d.185.1.1 77313,77314 1ubkL 534 86.33 e.18.1.1 88422 2volB 180 87.04 1k1xA 659 87.20 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2ordA 397 89.04 1jv2A 957 89.58 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337