Best Alignments for T0403

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2fgqX/T0403-2fgqX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fgqX/T0403-2fgqX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1888e-212.84e-81 f.4.3.1
2j1nA/T0403-2j1nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2j1nA/T0403-2j1nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0791e-205.15e-70
2ixwA/T0403-2ixwA-t2k-global-adpstyle1.a2m 2ixwA/T0403-2ixwA-t2k-global-adpstyle1.al 1.4868e-108.40e-66
2ixxA/T0403-2ixxA-t2k-global-adpstyle1.a2m 2ixxA/T0403-2ixxA-t2k-global-adpstyle1.al 2.2786e-101.22e-63
2o4vA/T0403-2o4vA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2o4vA/T0403-2o4vA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4497e-021.72e-19

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001