# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 6.27e-22 1e54A f.4.3.1 59258 2fgqX 332 1.01e-21 f.4.3.1 133439 2j1nA 346 5.17e-19 2omf 340 7.55e-19 2omf 1hxxA 340 8.23e-19 2omf f.4.3.1 61385 2por 301 1.20e-06 2por 2porA 301 1.20e-06 f.4.3.1 43759 3prn 289 2.49e-06 3prn 3prnA 289 2.49e-06 f.4.3.1 43761 1prn 289 2.62e-06 3prn 1a0tP 413 8.43e-04 1a0tP f.4.3.2 43794 2o4vA 411 1.21e-03 2odjA 428 7.98e-02 1qd5A 275 1.74e-01 1qd5A f.4.2.1 43748 1by5A 714 1.90e-01 1by5A f.4.3.3 43800 1qd6C 240 2.21e-01 1qd5A 2fcpA 723 2.36e-01 1by5A f.4.3.3 43802 1qfgA 725 2.70e-01 1by5A f.4.3.3 43803 1p4tA 155 2.71e-01 f.4.1.1 87779 1t16A 427 3.37e-01 f.4.3.4 106242 1i78A 297 3.43e-01 f.4.4.1 66046 2iwvA 281 3.54e-01 2mprA 421 3.65e-01 2mprA f.4.3.2 43788 1q40B 219 1.18e+00 d.17.4.2 95771 2jqyA 280 1.29e+00 1kmoA 774 1.35e+00 f.4.3.3 72753 1qj8A 148 1.42e+00 1qj8A f.4.1.1 43744 1po0A 751 1.42e+00 f.4.3.3 94960 2f1cX 286 1.72e+00 2rh7A 239 2.16e+00 2oitA 434 2.51e+00 1nqeA 594 2.78e+00 f.4.3.3 86027 2hpwA 233 3.19e+00 2gufA 594 3.21e+00 f.4.3.3 135736 1gc1H 229 3.66e+00 1gc1H b.1.1.1,b.1.1.2 20265,21265 1ux6A 350 5.14e+00 b.29.1.16,g.75.1.1 100145,100146 2c9jA 223 5.25e+00 1txnA 328 5.87e+00 d.248.1.1 112779 1yi9A 309 6.43e+00 b.121.1.2,b.121.1.2 123276,123277 1phm 310 6.96e+00 1phm 2oy7A 320 7.28e+00 1cb8A 678 7.40e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1txkA 498 7.70e+00 b.1.18.2,b.30.5.9 107425,107426 2dd7A 216 8.65e+00 1i31A 314 8.95e+00 1bw8A b.2.7.1 22481 1bxxA 285 9.00e+00 1bw8A b.2.7.1 22483 1qjpA 171 9.88e+00 1bxwA f.4.1.1 43742 1bw8A 321 9.95e+00 1bw8A b.2.7.1 22482 1w6sA 599 1.02e+01 b.70.1.1 114284 1k1xA 659 1.03e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1sdwA 314 1.06e+01 b.121.1.2,b.121.1.2 98810,98811 1qnxA 209 1.15e+01 1qnxA d.111.1.1 40914 1af6A 421 1.16e+01 2mprA f.4.3.2 43772 1tk1A 260 1.20e+01 d.248.1.1 107066 2p0wA 324 1.22e+01 1qexA 288 1.24e+01 1qexA b.32.1.1 24425 1w99A 558 1.26e+01 1fepA 724 1.41e+01 1fepA f.4.3.3 43808 1zgoA 223 1.53e+01 1hn0A 1021 1.57e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2v5iA 559 1.69e+01 2f1vA 197 1.72e+01 1rhi3 236 1.81e+01 1aym3 2nutA 769 1.86e+01 2o3oA 254 1.87e+01 2dddA 225 2.12e+01 2vadA 223 2.13e+01 1zuxA 224 2.17e+01 2ie2A 222 2.19e+01 1ggxA 223 2.24e+01 1ggxA d.22.1.1 38367 1fx5A 242 2.28e+01 1led b.29.1.1 24135 1jjoC 261 2.28e+01 1of5A 221 2.29e+01 d.17.4.2 86933 1yq2A 1024 2.31e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1yo8A 634 2.41e+01 1xmzA 241 2.49e+01 1o6gA 710 2.50e+01 b.69.7.1,c.69.1.4 81087,81088 2bf6A 449 2.65e+01 2qdrA 303 2.67e+01 1h2wA 710 2.76e+01 b.69.7.1,c.69.1.4 76596,76597 2go2A 163 2.95e+01 1h2xA 710 2.99e+01 b.69.7.1,c.69.1.4 76598,76599 1a2vA 655 3.05e+01 1a2vA b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1yiqA 689 3.10e+01 1jssA 224 3.21e+01 d.129.3.2 71844 1ukgA 252 3.31e+01 b.29.1.1 99489 1cid 177 3.31e+01 1cid 1cidA 177 3.31e+01 b.1.1.1,b.1.1.3 19740,21679 2rg4A 216 3.38e+01 2ejoA 223 3.44e+01 2uurA 245 3.46e+01 2qf4A 172 3.47e+01 1jeyB 565 3.55e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1vbgA 876 3.77e+01 c.1.12.2,c.8.1.1,d.142.1.5 119951,119952,119953 1usyA 275 3.82e+01 d.104.1.1 113422 2petA 231 3.93e+01 1ryp2 233 3.99e+01 1ryp2 1w61A 414 4.04e+01 2b3rA 134 4.13e+01 1a66A 178 4.13e+01 1a02N b.2.5.3 22441 1cov3 238 4.20e+01 1aym3 1diwA 441 4.30e+01 1a8d b.29.1.6,b.42.4.2 24264,25609 2hr7A 486 4.38e+01 1wcdJ 441 4.41e+01 b.121.4.9 120887 1ajoA 214 4.46e+01 1axkA b.29.1.2 24179 2pw0A 397 4.51e+01 1jeqB 565 4.53e+01 1jeqB b.131.1.2,c.62.1.4 90368,90369 1vyfA 135 4.54e+01 b.60.1.2 108902 2p4mA 219 4.64e+01 1v7wA 807 4.65e+01 a.102.1.4,b.30.5.3 108411,108412 1qfmA 710 4.68e+01 1qfmA b.69.7.1,c.69.1.4 27673,34641 1iqyA 638 4.68e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 1ymmA 191 4.80e+01 b.1.1.2,d.19.1.1 123701,123702 2il5A 171 4.86e+01 2qv3A 457 4.94e+01 2j5uA 255 4.95e+01 3bk5A 237 5.08e+01 1xkwA 665 5.09e+01 1wbiA 129 5.25e+01 1e8nA 710 5.30e+01 1qfmA b.69.7.1,c.69.1.4 27675,34643 2nn8A 138 5.43e+01 b.29.1.3 138392 2oqeA 660 5.46e+01 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1kjlA 146 5.51e+01 b.29.1.3 118689 2gzbA 166 5.56e+01 1r1a1 287 5.61e+01 1aym1 2p4bA 295 5.62e+01 2j3mA 572 5.70e+01 2hkdA 320 5.71e+01 2qxlA 658 5.88e+01 2aexA 346 5.95e+01 2q86B 254 5.98e+01 1r0uA 148 5.98e+01 b.60.1.5 96741 2qcuA 501 6.04e+01 1g1kA 143 6.05e+01 1aohA b.2.2.2 22404 2fauA 341 6.20e+01 2gw3A 225 6.27e+01 2aqqA 164 6.32e+01 2q6kA 283 6.40e+01 1h4uA 265 6.62e+01 1h4uA d.22.1.2,g.3.11.5 60622,60623 1hxs3 237 6.67e+01 1uisA 231 6.81e+01 d.22.1.1 99431 1h8lA 380 7.04e+01 b.3.2.1,c.56.5.1 65737,65738 1lurA 339 7.07e+01 b.30.5.4 84717 1g0u1 266 7.08e+01 1a3k 137 7.16e+01 1a3k 1xniA 118 7.16e+01 b.34.9.1,b.34.9.1 115582,115583 2a46A 238 7.17e+01 1t4wA 196 7.48e+01 b.2.5.2 106427 1bxwA 172 7.63e+01 1bxwA f.4.1.1 43743 1bkzA 135 7.78e+01 1a3k b.29.1.3 24202 2a9dA 372 7.97e+01 b.1.18.6,d.176.1.1 126431,126432