# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 2.58e-23 1e54A f.4.3.1 59258 2fgqX 332 5.11e-23 f.4.3.1 133439 2j1nA 346 3.61e-20 1hxxA 340 7.20e-20 2omf f.4.3.1 61385 2omf 340 7.79e-20 2omf 2por 301 5.99e-07 2por 2porA 301 5.99e-07 f.4.3.1 43759 1prn 289 6.94e-06 3prn 3prn 289 7.67e-06 3prn 3prnA 289 7.67e-06 f.4.3.1 43761 2o4vA 411 3.72e-03 1a0tP 413 4.91e-03 1a0tP f.4.3.2 43794 2odjA 428 3.15e-02 2fcpA 723 1.47e-01 1by5A f.4.3.3 43802 1p4tA 155 1.68e-01 f.4.1.1 87779 1qfgA 725 1.87e-01 1by5A f.4.3.3 43803 1by5A 714 1.96e-01 1by5A f.4.3.3 43800 2mprA 421 2.71e-01 2mprA f.4.3.2 43788 1i78A 297 2.91e-01 f.4.4.1 66046 1qd5A 275 2.96e-01 1qd5A f.4.2.1 43748 1t16A 427 3.02e-01 f.4.3.4 106242 1qd6C 240 3.40e-01 1qd5A 2iwvA 281 3.66e-01 2f1cX 286 8.40e-01 2gufA 594 8.56e-01 f.4.3.3 135736 1qj8A 148 9.75e-01 1qj8A f.4.1.1 43744 2jqyA 280 1.04e+00 1nqeA 594 1.49e+00 f.4.3.3 86027 1kmoA 774 1.70e+00 f.4.3.3 72753 1q40B 219 1.79e+00 d.17.4.2 95771 1po0A 751 2.04e+00 f.4.3.3 94960 1txnA 328 2.28e+00 d.248.1.1 112779 2rh7A 239 4.00e+00 1rhi3 236 4.72e+00 1aym3 1tk1A 260 4.95e+00 d.248.1.1 107066 2qv3A 457 5.07e+00 1gc1H 229 5.18e+00 1gc1H b.1.1.1,b.1.1.2 20265,21265 2hpwA 233 5.57e+00 1yi9A 309 6.00e+00 b.121.1.2,b.121.1.2 123276,123277 1qjpA 171 8.46e+00 1bxwA f.4.1.1 43742 1af6A 421 9.11e+00 2mprA f.4.3.2 43772 1phm 310 9.20e+00 1phm 1qexA 288 9.95e+00 1qexA b.32.1.1 24425 1ux6A 350 1.04e+01 b.29.1.16,g.75.1.1 100145,100146 2c9jA 223 1.07e+01 1jjoC 261 1.11e+01 1cb8A 678 1.12e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1txkA 498 1.24e+01 b.1.18.2,b.30.5.9 107425,107426 1a8d 452 1.34e+01 1a8d 1a8dA 452 1.34e+01 b.29.1.6,b.42.4.2 24262,25607 1i31A 314 1.36e+01 1bw8A b.2.7.1 22481 2uurA 245 1.39e+01 1cov3 238 1.42e+01 1aym3 1d0hA 469 1.42e+01 1a8d b.29.1.6,b.42.4.2 24265,25610 1diwA 441 1.43e+01 1a8d b.29.1.6,b.42.4.2 24264,25609 1w99A 558 1.50e+01 1jeyB 565 1.55e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 2oy7A 320 1.59e+01 2o3oA 254 1.62e+01 2f1vA 197 1.64e+01 1of5A 221 1.67e+01 d.17.4.2 86933 1wcdJ 441 1.75e+01 b.121.4.9 120887 1jeqB 565 1.82e+01 1jeqB b.131.1.2,c.62.1.4 90368,90369 2b3rA 134 1.85e+01 1hxs3 237 1.88e+01 2nutA 769 1.89e+01 1jssA 224 1.99e+01 d.129.3.2 71844 1w6sA 599 2.00e+01 b.70.1.1 114284 1sdwA 314 2.09e+01 b.121.1.2,b.121.1.2 98810,98811 1idk 359 2.21e+01 1qcxA 1idkA 359 2.21e+01 b.80.1.2 28025 2qf4A 172 2.25e+01 1bw8A 321 2.26e+01 1bw8A b.2.7.1 22482 2v5iA 559 2.55e+01 2oitA 434 2.63e+01 1qnxA 209 2.77e+01 1qnxA d.111.1.1 40914 1fepA 724 2.92e+01 1fepA f.4.3.3 43808 2p0wA 324 2.95e+01 2a9dA 372 3.01e+01 b.1.18.6,d.176.1.1 126431,126432 2rdgA 196 3.14e+01 2dd7A 216 3.36e+01 2hr7A 486 3.39e+01 1k1xA 659 3.41e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1b6a 478 3.43e+01 1bn5 1b6aA 478 3.43e+01 a.4.5.25,d.127.1.1 16223,41160 1zgoA 223 3.45e+01 1bxxA 285 3.47e+01 1bw8A b.2.7.1 22483 1wbiA 129 3.50e+01 1bob 320 3.58e+01 1bob 1bobA 320 3.58e+01 d.108.1.1 40816 2il5A 171 3.59e+01 1ggxA 223 3.63e+01 1ggxA d.22.1.1 38367 1cid 177 3.84e+01 1cid 1cidA 177 3.84e+01 b.1.1.1,b.1.1.3 19740,21679 2qn6A 414 3.92e+01 1v7wA 807 4.05e+01 a.102.1.4,b.30.5.3 108411,108412 2aexA 346 4.15e+01 1yo8A 634 4.30e+01 2hzmB 317 4.39e+01 1pvc3 238 4.48e+01 1aym3 1ryp2 233 4.53e+01 1ryp2 2qxlA 658 4.56e+01 2rg4A 216 4.57e+01 1bxwA 172 4.57e+01 1bxwA f.4.1.1 43743 2ie2A 222 4.81e+01 1hn0A 1021 4.86e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1a66A 178 4.90e+01 1a02N b.2.5.3 22441 1qa1A 554 4.92e+01 1tyv b.80.1.6 28047 2cxaA 256 5.12e+01 d.108.1.6 130993 2ealA 148 5.17e+01 1ajoA 214 5.30e+01 1axkA b.29.1.2 24179 1x31B 404 5.34e+01 2a46A 238 5.38e+01 1k2eA 156 5.53e+01 d.113.1.1 72010 2hkdA 320 5.73e+01 2dddA 225 5.92e+01 2df7A 458 6.09e+01 b.121.4.9 131449 2pw0A 397 6.13e+01 1vjuA 309 6.21e+01 d.248.1.1 100835 1vbgA 876 6.36e+01 c.1.12.2,c.8.1.1,d.142.1.5 119951,119952,119953 1bn5 478 6.68e+01 1bn5 1r0uA 148 6.77e+01 b.60.1.5 96741 1fx5A 242 6.86e+01 1led b.29.1.1 24135 1g0u1 266 6.87e+01 1g1kA 143 6.90e+01 1aohA b.2.2.2 22404 1bkzA 135 6.98e+01 1a3k b.29.1.3 24202 2dy1A 665 7.02e+01 1pkhA 204 7.07e+01 b.85.4.1 94832 2p4bA 295 7.13e+01 1xkwA 665 7.14e+01 1soxA 466 7.31e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 2qntA 141 7.42e+01 1y43B 173 7.46e+01 2oaaA 249 7.50e+01 1aqdA 192 7.55e+01 1iakA b.1.1.2,d.19.1.1 21585,38159 2bg9A 370 7.84e+01 2q6kA 283 7.89e+01