# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 2.80e-22 1e54A f.4.3.1 59258 2fgqX 332 5.32e-22 f.4.3.1 133439 2omf 340 8.18e-19 2omf 1hxxA 340 8.58e-19 2omf f.4.3.1 61385 2j1nA 346 9.03e-19 2por 301 9.08e-07 2por 2porA 301 9.08e-07 f.4.3.1 43759 1prn 289 8.76e-06 3prn 3prn 289 9.50e-06 3prn 3prnA 289 9.50e-06 f.4.3.1 43761 2o4vA 411 1.61e-03 1a0tP 413 5.03e-03 1a0tP f.4.3.2 43794 2odjA 428 1.05e-01 2fcpA 723 2.28e-01 1by5A f.4.3.3 43802 1p4tA 155 2.47e-01 f.4.1.1 87779 1qfgA 725 2.71e-01 1by5A f.4.3.3 43803 1by5A 714 2.86e-01 1by5A f.4.3.3 43800 2mprA 421 3.83e-01 2mprA f.4.3.2 43788 1qd6C 240 4.02e-01 1qd5A 1t16A 427 5.06e-01 f.4.3.4 106242 2iwvA 281 5.62e-01 1qd5A 275 6.56e-01 1qd5A f.4.2.1 43748 1q40B 219 8.03e-01 d.17.4.2 95771 1kmoA 774 8.42e-01 f.4.3.3 72753 1qj8A 148 9.53e-01 1qj8A f.4.1.1 43744 1po0A 751 9.76e-01 f.4.3.3 94960 1i78A 297 1.04e+00 f.4.4.1 66046 2f1cX 286 1.09e+00 2jqyA 280 1.52e+00 2hpwA 233 1.53e+00 2rh7A 239 1.61e+00 2gufA 594 2.27e+00 f.4.3.3 135736 1nqeA 594 2.92e+00 f.4.3.3 86027 1txkA 498 3.09e+00 b.1.18.2,b.30.5.9 107425,107426 2c9jA 223 3.57e+00 1txnA 328 3.68e+00 d.248.1.1 112779 1i31A 314 4.34e+00 1bw8A b.2.7.1 22481 1af6A 421 4.49e+00 2mprA f.4.3.2 43772 1tk1A 260 5.35e+00 d.248.1.1 107066 1phm 310 5.49e+00 1phm 1qjpA 171 5.72e+00 1bxwA f.4.1.1 43742 1yi9A 309 6.03e+00 b.121.1.2,b.121.1.2 123276,123277 1rhi3 236 6.08e+00 1aym3 2hr7A 486 6.82e+00 1gc1H 229 7.17e+00 1gc1H b.1.1.1,b.1.1.2 20265,21265 1sdwA 314 7.80e+00 b.121.1.2,b.121.1.2 98810,98811 1of5A 221 8.14e+00 d.17.4.2 86933 1bw8A 321 8.21e+00 1bw8A b.2.7.1 22482 2p0wA 324 8.49e+00 1qexA 288 1.05e+01 1qexA b.32.1.1 24425 1w99A 558 1.18e+01 1qnxA 209 1.23e+01 1qnxA d.111.1.1 40914 2o3oA 254 1.26e+01 1bxxA 285 1.32e+01 1bw8A b.2.7.1 22483 2f1vA 197 1.40e+01 1zgoA 223 1.54e+01 1ggxA 223 1.64e+01 1ggxA d.22.1.1 38367 1cb8A 678 1.64e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1yo8A 634 1.69e+01 1cid 177 1.71e+01 1cid 1cidA 177 1.71e+01 b.1.1.1,b.1.1.3 19740,21679 1k1xA 659 1.88e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2oitA 434 2.04e+01 2j3mA 572 2.26e+01 2p4bA 295 2.31e+01 2qf4A 172 2.57e+01 2go2A 163 2.60e+01 2pw0A 397 2.61e+01 2dddA 225 2.69e+01 2qxlA 658 2.72e+01 2il5A 171 2.84e+01 2qcuA 501 2.88e+01 2uurA 245 3.17e+01 1xkwA 665 3.22e+01 1hn0A 1021 3.23e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2qn6A 414 3.25e+01 2oy7A 320 3.33e+01 1ukgA 252 3.39e+01 b.29.1.1 99489 1oacA 727 3.42e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2aexA 346 3.44e+01 1bxwA 172 3.51e+01 1bxwA f.4.1.1 43743 1bkzA 135 3.54e+01 1a3k b.29.1.3 24202 2hyxA 352 3.62e+01 2nutA 769 3.64e+01 1jjoC 261 3.66e+01 1ux6A 350 3.67e+01 b.29.1.16,g.75.1.1 100145,100146 1vcaA 202 3.76e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1g1kA 143 3.79e+01 1aohA b.2.2.2 22404 2q86B 254 3.90e+01 2vadA 223 3.96e+01 1gttA 429 3.98e+01 d.177.1.1,d.177.1.1 70529,70530 2rg4A 216 4.01e+01 1a66A 178 4.04e+01 1a02N b.2.5.3 22441 3b9tA 484 4.09e+01 2gf3A 389 4.30e+01 c.3.1.2,d.16.1.3 135070,135071 1f0cA 305 4.33e+01 1c8oA e.1.1.1 42676 1el5A 389 4.36e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1w6sA 599 4.38e+01 b.70.1.1 114284 2dd7A 216 4.46e+01 1cov3 238 4.49e+01 1aym3 2gzbA 166 4.55e+01 1usyA 275 4.62e+01 d.104.1.1 113422 3bk5A 237 4.66e+01 2qdrA 303 4.72e+01 1yq2A 1024 4.75e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1hxs3 237 4.83e+01 2acoA 173 4.84e+01 1a8d 452 4.89e+01 1a8d 1a8dA 452 4.89e+01 b.29.1.6,b.42.4.2 24262,25607 1bob 320 4.89e+01 1bob 1bobA 320 4.89e+01 d.108.1.1 40816 1l9cA 389 4.90e+01 c.3.1.2,d.16.1.3 77815,77816 2b3rA 134 4.97e+01 1a02N 301 5.06e+01 1a02N b.1.18.1,b.2.5.3 21923,22440 1y7wA 291 5.07e+01 1w61A 414 5.16e+01 1fepA 724 5.32e+01 1fepA f.4.3.3 43808 2j5uA 255 5.39e+01 1c3mA 147 5.48e+01 1jotA b.77.3.1 27983 1wbiA 129 5.53e+01 1m93B 245 5.53e+01 2fi3I 58 5.56e+01 1zuxA 224 5.61e+01 2v5iA 559 5.94e+01 1d0hA 469 6.03e+01 1a8d b.29.1.6,b.42.4.2 24265,25610 1ymmA 191 6.04e+01 b.1.1.2,d.19.1.1 123701,123702 3c0tA 207 6.13e+01 1nqnA 122 6.17e+01 b.61.1.1 86042 2ealA 148 6.35e+01 1ydgA 211 6.41e+01 c.23.5.8 116614 1diwA 441 6.56e+01 1a8d b.29.1.6,b.42.4.2 24264,25609 1fx5A 242 6.71e+01 1led b.29.1.1 24135 2ie2A 222 6.83e+01 2icrA 237 7.05e+01 2qv3A 457 7.10e+01 1v7wA 807 7.17e+01 a.102.1.4,b.30.5.3 108411,108412 1r0uA 148 7.19e+01 b.60.1.5 96741 2p4mA 219 7.30e+01 2h5oA 234 7.48e+01 1hvc 203 7.48e+01 1hvc 3c8xA 206 7.52e+01 2qk0A 74 7.59e+01 2rikA 284 7.70e+01 1gwyA 175 7.88e+01 b.97.1.1 83356 2bg9A 370 7.89e+01 1c8oA 300 7.96e+01 1c8oA e.1.1.1 42677