# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 3.90e-25 1e54A f.4.3.1 59258 2fgqX 332 5.46e-25 f.4.3.1 133439 2omf 340 1.73e-24 2omf 1hxxA 340 1.88e-24 2omf f.4.3.1 61385 2j1nA 346 5.26e-24 2por 301 5.68e-07 2por 2porA 301 5.68e-07 f.4.3.1 43759 3prn 289 1.51e-05 3prn 3prnA 289 1.51e-05 f.4.3.1 43761 1prn 289 1.76e-05 3prn 2o4vA 411 3.49e-04 1a0tP 413 2.19e-02 1a0tP f.4.3.2 43794 2odjA 428 3.00e-01 1qd5A 275 3.87e-01 1qd5A f.4.2.1 43748 1qd6C 240 1.17e+00 1qd5A 1kmoA 774 1.33e+00 f.4.3.3 72753 1po0A 751 1.40e+00 f.4.3.3 94960 2hpwA 233 2.07e+00 1nqeA 594 3.00e+00 f.4.3.3 86027 1p4tA 155 3.42e+00 f.4.1.1 87779 2gufA 594 3.71e+00 f.4.3.3 135736 1t16A 427 3.76e+00 f.4.3.4 106242 2icrA 237 4.27e+00 2il5A 171 4.55e+00 3bo5A 290 4.93e+00 1ytqA 204 5.65e+00 b.11.1.1,b.11.1.1 124012,124013 1txkA 498 5.94e+00 b.1.18.2,b.30.5.9 107425,107426 1qexA 288 6.50e+00 1qexA b.32.1.1 24425 2f1cX 286 6.65e+00 2ogrA 229 7.62e+00 2aqqA 164 7.91e+00 1f0cA 305 8.05e+00 1c8oA e.1.1.1 42676 1hn0A 1021 8.06e+00 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2ehzA 302 8.39e+00 1y7wA 291 8.81e+00 2mprA 421 8.94e+00 2mprA f.4.3.2 43788 1qjpA 171 9.24e+00 1bxwA f.4.1.1 43742 1bec 238 1.02e+01 1bec 1becA 238 1.02e+01 b.1.1.1,b.1.1.2 20627,21561 1ux6A 350 1.05e+01 b.29.1.16,g.75.1.1 100145,100146 1r1a1 287 1.07e+01 1aym1 2jqyA 280 1.08e+01 2aqpA 164 1.16e+01 1txnA 328 1.17e+01 d.248.1.1 112779 2iwvA 281 1.28e+01 2h5uA 499 1.31e+01 2bb2 181 1.42e+01 2bb2 1qfgA 725 1.52e+01 1by5A f.4.3.3 43803 1k1xA 659 1.56e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1eonA 245 1.58e+01 1rvaA c.52.1.2 33238 1ukgA 252 1.60e+01 b.29.1.1 99489 2c9jA 223 1.65e+01 1hleA 345 1.67e+01 1ovaA e.1.1.1 42618 1yq2A 1024 1.77e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1i78A 297 1.79e+01 f.4.4.1 66046 2j04B 524 1.97e+01 1cb8A 678 2.24e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1aym1 285 2.31e+01 1aym1 1xmzA 241 2.34e+01 1hnf 182 2.53e+01 1qa9A 1hnfA 182 2.53e+01 b.1.1.1,b.1.1.3 19741,21680 2bf6A 449 2.58e+01 2bjqA 345 2.60e+01 b.169.1.1,b.169.1.1 128626,128627 2v5iA 559 2.64e+01 2rikA 284 2.74e+01 1ve9A 347 2.79e+01 c.4.1.2,d.16.1.3 100571,100572 1m8uA 173 2.84e+01 b.11.1.1,b.11.1.1 91233,91234 1fx5A 242 2.87e+01 1led b.29.1.1 24135 1jv2A 957 2.98e+01 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 1q40B 219 3.03e+01 d.17.4.2 95771 1preA 470 3.05e+01 1preA d.169.1.2,f.8.1.1 42437,43824 3c8wA 255 3.06e+01 2gw3A 225 3.08e+01 1ryp2 233 3.11e+01 1ryp2 1m93B 245 3.15e+01 2q86B 254 3.23e+01 1tv8A 340 3.25e+01 c.1.28.3 107352 2fb2A 340 3.37e+01 2qdrA 303 3.42e+01 2b3rA 134 3.49e+01 1yo8A 634 3.53e+01 3bjeA 349 3.60e+01 1jmxA 494 3.60e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1an9A 340 3.61e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1sx5A 244 3.61e+01 c.52.1.2 99023 2pqsA 159 3.62e+01 1tk1A 260 3.68e+01 d.248.1.1 107066 1w9hA 427 3.74e+01 c.55.3.10 120785 1ju3A 583 3.91e+01 b.18.1.13,c.69.1.21 67300,67301 1kxoA 184 3.92e+01 b.60.1.1 84475 2oz4A 265 4.16e+01 1xkwA 665 4.21e+01 2hahA 116 4.31e+01 2aexA 346 4.36e+01 2pil 159 4.58e+01 2pil 2g6yA 217 4.60e+01 1p4oA 322 4.77e+01 d.144.1.7 87775 1jhjA 171 4.83e+01 b.18.1.9 66714 3b9cA 144 4.95e+01 1yqfA 203 5.10e+01 d.25.1.1 123880 1z52A 470 5.22e+01 d.169.1.2,f.8.1.1 124445,124446 1bbpA 173 5.39e+01 1bbpA b.60.1.1 27147 1cid 177 5.47e+01 1cid 1cidA 177 5.47e+01 b.1.1.1,b.1.1.3 19740,21679 2i0oA 304 5.58e+01 1upsA 420 5.70e+01 b.29.1.2,b.42.2.3 113394,113395 2f1vA 197 5.75e+01 2bemA 170 5.79e+01 b.1.18.2 116698 2j89A 261 6.10e+01 2ej9A 237 6.36e+01 3bn6A 158 6.37e+01 2iciA 227 6.39e+01 1w6nA 134 6.50e+01 b.29.1.3 114275 2o62A 270 6.56e+01 1mjc 69 6.60e+01 1mjc 1mjcA 69 6.60e+01 b.40.4.5 25319 2hi2A 158 6.90e+01 2z6rA 265 6.90e+01 1c0pA 363 6.94e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1kzlA 208 6.99e+01 b.43.4.3,b.43.4.3 77635,77636 1zuxA 224 7.08e+01 2q3hA 201 7.08e+01 1y55X 126 7.11e+01 1usyA 275 7.26e+01 d.104.1.1 113422 1t46A 313 7.40e+01 d.144.1.7 106397 1qj8A 148 7.49e+01 1qj8A f.4.1.1 43744 2h2zA 306 7.60e+01 1wbiA 129 7.64e+01 1xeuA 263 7.79e+01 2b4wA 315 7.86e+01 b.67.2.5 127866