# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 1.24e-23 1e54A f.4.3.1 59258 2fgqX 332 2.80e-23 f.4.3.1 133439 1hxxA 340 3.91e-23 2omf f.4.3.1 61385 2omf 340 4.70e-23 2omf 2j1nA 346 1.30e-22 2porA 301 1.32e-03 f.4.3.1 43759 2por 301 1.57e-03 2por 2hs3A 603 1.40e+00 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1vk3A 615 1.57e+00 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2qv3A 457 2.12e+00 2iciA 227 2.61e+00 2okxA 956 2.63e+00 3prnA 289 3.74e+00 f.4.3.1 43761 3prn 289 3.93e+00 3prn 1kxpD 458 4.32e+00 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 2o4vA 411 4.71e+00 2pb2A 420 5.48e+00 1h5rA 293 7.67e+00 c.68.1.6 65623 1prn 289 7.77e+00 3prn 2yxxA 386 1.03e+01 3c5iA 369 1.12e+01 1zq6A 359 1.33e+01 2fp8A 322 1.35e+01 1nowA 507 1.53e+01 c.1.8.6,d.92.2.1 85936,85937 1vefA 395 1.59e+01 c.67.1.4 120018 1cb8A 678 1.67e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1gpuA 680 1.68e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1mp4A 292 1.92e+01 c.68.1.6 79376 1trkA 680 1.94e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 2hpwA 233 1.96e+01 2dj0A 137 2.08e+01 1g0cA 364 2.26e+01 7a3hA c.1.8.3 60165 1p4tA 155 2.32e+01 f.4.1.1 87779 1vb3A 428 2.32e+01 c.79.1.1 119942 1vf8A 377 2.39e+01 c.1.8.5,d.26.3.1 120029,120030 1itxA 419 2.40e+01 c.1.8.5,d.26.3.1 71425,71426 1fxoA 293 2.41e+01 1g0rA c.68.1.6 34524 1e9lA 377 2.47e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 2fbeA 201 2.59e+01 b.29.1.22 133241 1gzcA 239 2.63e+01 b.29.1.1 70803 1lci 550 2.68e+01 1lci 1vljA 407 2.70e+01 e.22.1.2 108832 1ml4A 308 2.77e+01 c.78.1.1,c.78.1.1 79255,79256 1uokA 558 2.99e+01 b.71.1.1,c.1.8.1 27801,28788 1c1lA 136 3.03e+01 1c1lA b.29.1.3 24219 1uok 558 3.07e+01 1uok 2z43A 324 3.24e+01 1lvwA 295 3.25e+01 c.68.1.6 84723 1irxA 523 3.44e+01 a.97.1.2,c.26.1.1 71378,71379 1vr6A 350 3.52e+01 c.1.10.4 120439 1ryaA 160 3.55e+01 d.113.1.5 105122 2zaiA 497 3.61e+01 1jjiA 311 3.91e+01 c.69.1.2 66766 2qhpA 296 3.91e+01 1mjcA 69 3.92e+01 b.40.4.5 25319 2jc5A 259 4.03e+01 1r9jA 673 4.05e+01 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1ejxC 567 4.11e+01 b.92.1.1,c.1.9.2 83184,83185 1aj8A 371 4.11e+01 1aj8A a.103.1.1 18900 1vj7A 393 4.55e+01 a.211.1.1,d.218.1.8 100801,100802 3bo5A 290 4.58e+01 2bdeA 470 4.75e+01 c.108.1.23 128335 1rzmA 338 4.87e+01 c.1.10.4 105137 3c4zA 543 4.89e+01 1bkzA 135 4.94e+01 1a3k b.29.1.3 24202 1wiwA 290 5.11e+01 c.80.1.1 114681 1peqA 714 5.13e+01 a.98.1.1,c.7.1.2 104131,104132 1nqeA 594 5.15e+01 f.4.3.3 86027 1a8dA 452 5.37e+01 b.29.1.6,b.42.4.2 24262,25607 1a8d 452 5.39e+01 1a8d 1p7hL 286 5.49e+01 b.1.18.1,b.2.5.3 94271,94272 1fwxA 595 5.56e+01 b.6.1.4,b.69.3.1 60069,60070 1abbA 828 5.66e+01 1a8i c.87.1.4 35536 1f74A 293 6.12e+01 1nal3 c.1.10.1 29079 1y42X 392 6.14e+01 1phkA 298 6.15e+01 d.144.1.7 41635 1xsfA 108 6.22e+01 2dpyA 438 6.22e+01 2v2fF 390 6.25e+01 1mjc 69 6.33e+01 1mjc 1xw3A 110 6.50e+01 1vjnA 220 6.57e+01 d.157.1.4 100825 2o23A 265 6.64e+01 c.2.1.2 138884 1cqqA 180 6.85e+01 1cqqA b.47.1.4 26422 2rb8A 104 6.85e+01 2hjpA 290 6.99e+01 2hfkA 319 7.01e+01 2o7iA 592 7.27e+01 1n9pA 207 7.32e+01 b.1.18.16 80343 2a0uA 383 7.38e+01 2qntA 141 7.44e+01 2p0wA 324 7.45e+01 1o12A 376 7.50e+01 b.92.1.5,c.1.9.10 80758,80759 2zbwA 335 7.50e+01 2cbiA 594 7.52e+01 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 1txnA 328 7.62e+01 d.248.1.1 112779 1a02N 301 7.69e+01 1a02N b.1.18.1,b.2.5.3 21923,22440 1yzsA 121 7.76e+01 2cy8A 453 7.80e+01 1e6wA 260 7.92e+01 1e6wA c.2.1.2 59326