# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 5.23e-24 1e54A f.4.3.1 59258 2fgqX 332 8.98e-24 f.4.3.1 133439 1hxxA 340 1.65e-23 2omf f.4.3.1 61385 2omf 340 2.00e-23 2omf 2j1nA 346 6.36e-23 2por 301 4.80e-07 2por 2porA 301 4.80e-07 f.4.3.1 43759 1prn 289 9.72e-05 3prn 3prn 289 9.85e-05 3prn 3prnA 289 9.85e-05 f.4.3.1 43761 2o4vA 411 4.55e-04 1a0tP 413 6.09e-02 1a0tP f.4.3.2 43794 2odjA 428 2.61e-01 1p4tA 155 3.36e-01 f.4.1.1 87779 2iwvA 281 5.69e-01 2f1cX 286 1.10e+00 1i78A 297 1.29e+00 f.4.4.1 66046 1qd5A 275 1.31e+00 1qd5A f.4.2.1 43748 1t16A 427 1.45e+00 f.4.3.4 106242 1tyv 542 2.75e+00 1tyv 2jqyA 280 2.79e+00 1qd6C 240 2.89e+00 1qd5A 2gufA 594 3.08e+00 f.4.3.3 135736 1kmoA 774 4.01e+00 f.4.3.3 72753 1po0A 751 4.28e+00 f.4.3.3 94960 1k1xA 659 5.05e+00 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2mprA 421 5.73e+00 2mprA f.4.3.2 43788 1nqeA 594 6.20e+00 f.4.3.3 86027 1txnA 328 7.96e+00 d.248.1.1 112779 2hpwA 233 8.21e+00 1a8d 452 8.39e+00 1a8d 1a8dA 452 8.39e+00 b.29.1.6,b.42.4.2 24262,25607 1f0cA 305 1.02e+01 1c8oA e.1.1.1 42676 1tyvA 554 1.03e+01 b.80.1.6 28038 1qfgA 725 1.25e+01 1by5A f.4.3.3 43803 1qexA 288 1.51e+01 1qexA b.32.1.1 24425 2il5A 171 1.53e+01 2v5iA 559 1.55e+01 1m93B 245 1.56e+01 1cb8A 678 1.56e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2icrA 237 1.56e+01 1bec 238 1.59e+01 1bec 1becA 238 1.59e+01 b.1.1.1,b.1.1.2 20627,21561 1qjpA 171 1.73e+01 1bxwA f.4.1.1 43742 3bo5A 290 1.74e+01 1kxoA 184 1.75e+01 b.60.1.1 84475 1q40B 219 1.83e+01 d.17.4.2 95771 2zaiA 497 2.09e+01 1qj8A 148 2.11e+01 1qj8A f.4.1.1 43744 2b3rA 134 2.18e+01 1fx5A 242 2.24e+01 1led b.29.1.1 24135 1jhjA 171 2.29e+01 b.18.1.9 66714 2q86B 254 2.31e+01 1tk1A 260 2.38e+01 d.248.1.1 107066 2z80A 353 2.39e+01 1yo8A 634 2.49e+01 2f1vA 197 2.49e+01 1bbpA 173 2.58e+01 1bbpA b.60.1.1 27147 1txkA 498 2.94e+01 b.1.18.2,b.30.5.9 107425,107426 2c9jA 223 3.00e+01 2hahA 116 3.02e+01 2qntA 141 3.14e+01 2a46A 238 3.20e+01 2madH 373 3.22e+01 2bbkH b.69.2.1 27639 3psgA 370 3.25e+01 b.50.1.2 26841 2dj0A 137 3.35e+01 2ogrA 229 3.42e+01 1ux6A 350 3.44e+01 b.29.1.16,g.75.1.1 100145,100146 2odiA 238 3.50e+01 2bjqA 345 3.70e+01 b.169.1.1,b.169.1.1 128626,128627 1kqfA 1015 3.75e+01 b.52.2.2,c.81.1.1 72871,72872 1h5rA 293 3.98e+01 c.68.1.6 65623 1ytqA 204 4.37e+01 b.11.1.1,b.11.1.1 124012,124013 2cxaA 256 4.51e+01 d.108.1.6 130993 1itbB 315 4.70e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1tv8A 340 4.73e+01 c.1.28.3 107352 2cb4A 291 4.99e+01 2biwA 490 4.99e+01 2re9A 181 4.99e+01 1mp4A 292 5.07e+01 c.68.1.6 79376 2iciA 227 5.16e+01 2j89A 261 5.34e+01 2pqsA 159 5.49e+01 3bn6A 158 5.54e+01 2hkjA 469 5.59e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 1lkeA 184 5.65e+01 b.60.1.1 84622 1qpcA 279 5.74e+01 1fgkA d.144.1.7 41685 2rdgA 196 6.00e+01 1hn0A 1021 6.17e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1usyA 275 6.19e+01 d.104.1.1 113422 2hbtA 247 6.28e+01 1h54A 754 6.30e+01 a.102.1.4,b.30.5.3 60634,60635 2hdiA 639 6.46e+01 1uxtA 501 6.47e+01 c.82.1.1 108125 1mx0A 472 6.56e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1wmxA 205 6.61e+01 b.18.1.24 109418 1t70A 255 6.64e+01 d.159.1.9 112275 1mkfA 382 6.66e+01 b.116.1.1 79232 1vgjA 184 6.91e+01 2fbeA 201 6.94e+01 b.29.1.22 133241 1b6a 478 6.97e+01 1bn5 1b6aA 478 6.97e+01 a.4.5.25,d.127.1.1 16223,41160 1r1a1 287 7.01e+01 1aym1 1mjc 69 7.03e+01 1mjc 1mjcA 69 7.03e+01 b.40.4.5 25319 2ehzA 302 7.13e+01 1ogoX 574 7.15e+01 b.133.1.1,b.80.1.10 92925,92926 2aexA 346 7.23e+01 2aqqA 164 7.37e+01 1tm0A 350 7.38e+01 d.21.1.3 107147 2e26A 725 7.77e+01 2bb2 181 7.89e+01 2bb2 2j1vA 151 7.94e+01 1t46A 313 7.99e+01 d.144.1.7 106397