# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 1.77e-26 1e54A f.4.3.1 59258 2fgqX 332 3.96e-26 f.4.3.1 133439 2omf 340 6.89e-26 2omf 1hxxA 340 8.41e-26 2omf f.4.3.1 61385 2j1nA 346 3.28e-25 2por 301 4.85e-08 2por 2porA 301 4.85e-08 f.4.3.1 43759 3prn 289 4.12e-06 3prn 3prnA 289 4.12e-06 f.4.3.1 43761 1prn 289 4.69e-06 3prn 2o4vA 411 4.14e-05 1a0tP 413 1.01e-02 1a0tP f.4.3.2 43794 1i78A 297 1.26e-01 f.4.4.1 66046 1p4tA 155 1.31e-01 f.4.1.1 87779 2iwvA 281 2.69e-01 1t16A 427 8.22e-01 f.4.3.4 106242 2f1cX 286 8.36e-01 1po0A 751 8.98e-01 f.4.3.3 94960 1kmoA 774 1.32e+00 f.4.3.3 72753 1k1xA 659 2.12e+00 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1qd5A 275 2.16e+00 1qd5A f.4.2.1 43748 2odjA 428 2.19e+00 1a8d 452 2.29e+00 1a8d 1a8dA 452 2.29e+00 b.29.1.6,b.42.4.2 24262,25607 2jqyA 280 2.33e+00 2hpwA 233 2.61e+00 2bjqA 345 2.67e+00 b.169.1.1,b.169.1.1 128626,128627 2icrA 237 2.93e+00 1qjpA 171 4.53e+00 1bxwA f.4.1.1 43742 2f1vA 197 4.54e+00 1qd6C 240 5.16e+00 1qd5A 2ogrA 229 5.29e+00 2ehzA 302 5.46e+00 1f0cA 305 6.17e+00 1c8oA e.1.1.1 42676 1cb8A 678 6.44e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1qfgA 725 6.72e+00 1by5A f.4.3.3 43803 2mprA 421 6.77e+00 2mprA f.4.3.2 43788 2il5A 171 6.82e+00 2gw3A 225 7.38e+00 1fx5A 242 7.47e+00 1led b.29.1.1 24135 2bemA 170 7.52e+00 b.1.18.2 116698 1jhjA 171 7.99e+00 b.18.1.9 66714 2a46A 238 8.01e+00 1m93B 245 8.80e+00 1qexA 288 9.21e+00 1qexA b.32.1.1 24425 1yo8A 634 9.34e+00 3bo5A 290 1.12e+01 1txnA 328 1.15e+01 d.248.1.1 112779 3bgyA 237 1.18e+01 2ej9A 237 1.29e+01 1q40B 219 1.29e+01 d.17.4.2 95771 1jv2A 957 1.30e+01 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 1upsA 420 1.35e+01 b.29.1.2,b.42.2.3 113394,113395 2biwA 490 1.39e+01 2hahA 116 1.41e+01 2hr0A 645 1.46e+01 1hnf 182 1.53e+01 1qa9A 1hnfA 182 1.53e+01 b.1.1.1,b.1.1.3 19741,21680 1ux6A 350 1.62e+01 b.29.1.16,g.75.1.1 100145,100146 1txkA 498 1.73e+01 b.1.18.2,b.30.5.9 107425,107426 1h2wA 710 2.00e+01 b.69.7.1,c.69.1.4 76596,76597 1qfmA 710 2.04e+01 1qfmA b.69.7.1,c.69.1.4 27673,34641 1lurA 339 2.07e+01 b.30.5.4 84717 1bbpA 173 2.07e+01 1bbpA b.60.1.1 27147 1zuxA 224 2.11e+01 3psgA 370 2.11e+01 b.50.1.2 26841 3bn6A 158 2.13e+01 2pqsA 159 2.14e+01 2h5uA 499 2.18e+01 1xmzA 241 2.30e+01 2aqpA 164 2.31e+01 1p9qC 256 2.35e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2aqqA 164 2.37e+01 2b3rA 134 2.39e+01 1ytqA 204 2.42e+01 b.11.1.1,b.11.1.1 124012,124013 1wmxA 205 2.45e+01 b.18.1.24 109418 1o6gA 710 2.62e+01 b.69.7.1,c.69.1.4 81087,81088 2g6yA 217 2.63e+01 1mu5A 471 2.74e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1q8iA 783 2.78e+01 c.55.3.5,e.8.1.1 96208,96209 2z80A 353 2.95e+01 2re9A 181 2.99e+01 1ggxA 223 3.00e+01 1ggxA d.22.1.1 38367 1tk1A 260 3.02e+01 d.248.1.1 107066 2c9jA 223 3.03e+01 1yi9A 309 3.04e+01 b.121.1.2,b.121.1.2 123276,123277 1tv8A 340 3.06e+01 c.1.28.3 107352 1wdiA 345 3.06e+01 e.53.1.1 114535 1zgoA 223 3.13e+01 3c5pA 197 3.15e+01 2hbtA 247 3.16e+01 1hq0A 295 3.25e+01 1hzgA d.194.1.1 61122 2cm5A 166 3.26e+01 b.7.1.2 130613 2qdrA 303 3.32e+01 2hkjA 469 3.39e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 2h5oA 234 3.54e+01 1fnlA 175 3.56e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1c0pA 363 3.58e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2j1vA 151 3.61e+01 2oajA 902 3.62e+01 1qj8A 148 3.66e+01 1qj8A f.4.1.1 43744 2p4mA 219 3.68e+01 2v5iA 559 3.78e+01 3cebA 194 3.79e+01 2o62A 270 3.82e+01 1vgjA 184 3.89e+01 1q2wA 308 3.95e+01 b.47.1.4 88355 2cb4A 291 4.01e+01 1of5A 221 4.06e+01 d.17.4.2 86933 2g19A 244 4.18e+01 2a6hA 315 4.20e+01 d.74.3.1,d.181.1.1 126260,126261 1who 96 4.39e+01 1who 1whoA 96 4.39e+01 b.7.3.1 23215 1ri6A 343 4.70e+01 b.69.11.1 97503 2h2zA 306 4.86e+01 2amdA 311 4.88e+01 1mx0A 472 4.89e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1t46A 313 4.94e+01 d.144.1.7 106397 2fnjA 226 4.99e+01 b.29.1.22 133818 1kxoA 184 5.10e+01 b.60.1.1 84475 2nooA 502 5.12e+01 2iciA 227 5.13e+01 2mev1 277 5.15e+01 2mev1 1o6vA 466 5.19e+01 b.1.18.15,c.10.2.1 81099,81100 3cla 213 5.22e+01 3cla 3claA 213 5.22e+01 c.43.1.1 32610 1h5uA 842 5.22e+01 1a8i c.87.1.4 60655 1gwyA 175 5.29e+01 b.97.1.1 83356 1hn0A 1021 5.39e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1yllA 200 5.39e+01 b.82.1.17 123653 2zaiA 497 5.45e+01 2fb2A 340 5.52e+01 1xf1A 926 5.54e+01 1mjc 69 5.54e+01 1mjc 1mjcA 69 5.54e+01 b.40.4.5 25319 1aym1 285 5.60e+01 1aym1 1ryp2 233 5.65e+01 1ryp2 1t95A 240 5.65e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1mpyA 307 5.67e+01 1mpyA d.32.1.3,d.32.1.3 38508,38509 1r1a1 287 5.78e+01 1aym1 1g8kB 133 5.80e+01 1g8jB b.33.1.1 24435 2aqmA 154 5.86e+01 2gj4A 824 5.87e+01 c.87.1.4 135256 2awkA 228 5.92e+01 1a8i 842 5.94e+01 1a8i 2f6eA 127 6.00e+01 1wbiA 129 6.01e+01 2oitA 434 6.02e+01 2j89A 261 6.19e+01 2rh7A 239 6.19e+01 2q86B 254 6.27e+01 2j21A 219 6.41e+01 2vadA 223 6.41e+01 1phm 310 6.57e+01 1phm 1bec 238 6.64e+01 1bec 1becA 238 6.64e+01 b.1.1.1,b.1.1.2 20627,21561 2hx0A 154 6.64e+01 d.290.1.3 136830 1uolA 219 6.67e+01 b.2.5.2 99695 1h54A 754 6.80e+01 a.102.1.4,b.30.5.3 60634,60635 1ju3A 583 6.96e+01 b.18.1.13,c.69.1.21 67300,67301 1y55X 126 7.10e+01 2d5lA 706 7.12e+01 1eguA 731 7.48e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2cb2A 318 7.48e+01 d.58.4.17 130174 1nr0A 611 7.48e+01 b.69.4.1,b.69.4.1 86078,86079 2a9dA 372 7.67e+01 b.1.18.6,d.176.1.1 126431,126432 1gzcA 239 7.70e+01 b.29.1.1 70803 2bl9A 238 7.74e+01 2bjrA 368 7.75e+01 b.169.1.1,b.169.1.1 128628,128629 1kzlA 208 7.83e+01 b.43.4.3,b.43.4.3 77635,77636 2qxlA 658 7.87e+01 2qf4A 172 7.87e+01