# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 8.40e-21 1e54A f.4.3.1 59258 2fgqX 332 1.36e-20 f.4.3.1 133439 2omf 340 3.78e-20 2omf 1hxxA 340 4.29e-20 2omf f.4.3.1 61385 2j1nA 346 1.02e-19 2por 301 9.51e-04 2por 2porA 301 9.51e-04 f.4.3.1 43759 2o4vA 411 9.41e-02 2hs3A 603 1.39e+00 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1peqA 714 1.97e+00 a.98.1.1,c.7.1.2 104131,104132 2pb2A 420 2.19e+00 1vk3A 615 3.08e+00 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1jfxA 217 3.14e+00 c.1.8.8 62943 1kxpD 458 3.16e+00 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1aj8A 371 3.23e+00 1aj8A a.103.1.1 18900 1vb3A 428 3.32e+00 c.79.1.1 119942 1o12A 376 4.44e+00 b.92.1.5,c.1.9.10 80758,80759 3prn 289 4.67e+00 3prn 3prnA 289 4.67e+00 f.4.3.1 43761 2fp8A 322 4.98e+00 1hl2A 297 5.40e+00 c.1.10.1 83581 1d8wA 426 5.43e+00 1de5A c.1.15.2 29394 1f74A 293 5.47e+00 1nal3 c.1.10.1 29079 1w6kA 732 5.61e+00 a.102.4.2,a.102.4.2 114271,114272 1prn 289 7.26e+00 3prn 1wiwA 290 7.52e+00 c.80.1.1 114681 1g0cA 364 7.96e+00 7a3hA c.1.8.3 60165 2yxxA 386 9.05e+00 1ddzA 496 1.03e+01 1ddzA c.53.2.1,c.53.2.1 33372,33373 2a9gA 418 1.10e+01 d.126.1.4 126435 3mddA 385 1.16e+01 3mdeA a.29.3.1,e.6.1.1 16592,42853 1kqfA 1015 1.16e+01 b.52.2.2,c.81.1.1 72871,72872 1nal1 297 1.19e+01 1nal3 1uok 558 1.24e+01 1uok 1uokA 558 1.24e+01 b.71.1.1,c.1.8.1 27801,28788 1v6tA 255 1.52e+01 c.6.2.5 113550 2a0uA 383 1.70e+01 2btuA 346 1.78e+01 1trkA 680 1.82e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 1gpuA 680 2.02e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 9gafA 295 2.07e+01 1apyA d.153.1.5 42008 1h5rA 293 2.13e+01 c.68.1.6 65623 2okxA 956 2.16e+01 1mp4A 292 2.19e+01 c.68.1.6 79376 1i9zA 347 2.20e+01 1i9yA d.151.1.2 62102 1rxxA 421 2.26e+01 d.126.1.4 98061 2qv3A 457 2.27e+01 2fqxA 318 2.43e+01 1vj7A 393 2.59e+01 a.211.1.1,d.218.1.8 100801,100802 1rybA 212 2.66e+01 c.56.3.1 98098 1nowA 507 2.70e+01 c.1.8.6,d.92.2.1 85936,85937 1lci 550 2.71e+01 1lci 1vefA 395 2.94e+01 c.67.1.4 120018 2douA 376 2.97e+01 1jjiA 311 3.14e+01 c.69.1.2 66766 2gn0A 342 3.23e+01 2ez2A 456 3.26e+01 2hjpA 290 3.32e+01 1lrwA 600 3.32e+01 b.70.1.1 91111 2okcA 445 3.40e+01 1p4kA 295 3.45e+01 d.153.1.5 87772 1c3wA 222 3.56e+01 1c3wA f.13.1.1 43405 1lvwA 295 3.57e+01 c.68.1.6 84723 1cb8A 678 3.58e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1htjF 210 3.64e+01 1htjF a.91.1.1 61254 1yo8A 634 3.88e+01 2ok8A 316 3.90e+01 1ox6A 555 4.02e+01 c.1.2.1,c.23.16.1 87505,87506 1zb1A 392 4.03e+01 1jvnA 555 4.06e+01 c.1.2.1,c.23.16.1 67355,67356 1ax4A 467 4.14e+01 1ax4A c.67.1.2 34391 2jfnA 285 4.15e+01 2bh0A 208 4.16e+01 1p4tA 155 4.22e+01 f.4.1.1 87779 1xahA 354 4.23e+01 1g0dA 695 4.24e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2depA 356 4.31e+01 2i7gA 376 4.48e+01 2p9wA 334 4.86e+01 1pzgA 331 4.93e+01 c.2.1.5,d.162.1.1 95425,95426 2gsmA 566 4.94e+01 f.24.1.1 135589 2h8zA 359 5.17e+01 2gp4A 628 5.26e+01 c.8.2.2,d.334.1.1 135448,135449 1jqnA 883 5.33e+01 c.1.12.3 77159 2vfjA 366 5.42e+01 1tltA 319 5.43e+01 c.2.1.3,d.81.1.5 107135,107136 2z1dA 372 5.51e+01 2dfaA 250 5.64e+01 c.6.2.5 131469 1z47A 355 5.73e+01 1itxA 419 5.74e+01 c.1.8.5,d.26.3.1 71425,71426 2eh6A 375 5.86e+01 1qfxA 460 5.93e+01 1qfxA c.60.1.2 33994 3bh1A 507 6.16e+01 1hn0A 1021 6.23e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2ej9A 237 6.29e+01 2gouA 365 6.35e+01 1a02N 301 6.74e+01 1a02N b.1.18.1,b.2.5.3 21923,22440 2o34A 250 6.75e+01 1in6A 334 6.86e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2zaiA 497 7.02e+01 1srqA 341 7.07e+01 e.55.1.1 105967 1h16A 759 7.10e+01 c.7.1.1 76462 2iciA 227 7.14e+01 1gntA 553 7.16e+01 e.26.1.1 70290 1ghsA 306 7.16e+01 1aq0A c.1.8.3 28840 1lurA 339 7.19e+01 b.30.5.4 84717 1ur4A 399 7.20e+01 c.1.8.3 113402 2dplA 308 7.24e+01 1fiy 883 7.35e+01 1fiy 1r0wA 286 7.51e+01 c.37.1.12 96754 2dj0A 137 7.63e+01 1un8A 552 7.78e+01 c.119.1.2,a.208.1.1 103806,99661 1jetA 517 7.84e+01 1jevA c.94.1.1 35718 1vhoA 346 7.87e+01 b.49.3.1,c.56.5.4 100694,100695 1yxmA 303 7.89e+01 c.2.1.2 124192 1glcG 501 7.92e+01 1glcG c.55.1.4,c.55.1.4 33519,33520 1ezwA 349 7.96e+01 1ezwA c.1.16.3 29558