# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hxxA 341 2.296e-38 2omf f.4.3.1 61385 2omf 341 2.940e-37 2omf 1e54A 333 1.957e-31 1e54A f.4.3.1 59258 2j1nA 347 5.887e-31 2porA 302 4.658e-28 f.4.3.1 43759 2fgqX 331 3.589e-27 f.4.3.1 133439 1prn 290 5.958e-23 3prn 2por 302 9.539e-23 2por 3prnA 290 1.872e-21 f.4.3.1 43761 3prn 290 5.895e-20 3prn 2f1vA 183 4.402e-01 2h0bA 182 9.461e-01 1pz7A 189 1.038e+00 b.29.1.4 95405 3b3qE 188 1.422e+00 2r16A 176 1.615e+00 1qu0A 182 1.765e+00 1dykA b.29.1.4 24225 1c4rA 181 1.874e+00 1c4rA b.29.1.4 24229 1yymM 27 2.335e+00 1p4tA 156 2.383e+00 f.4.1.1 87779 3bodA 179 3.103e+00 1wkaA 144 6.711e+00 b.51.1.1 120978 2yyyA 343 8.267e+00 1fepA 681 9.139e+00 1fepA f.4.3.3 43808 1crwG 334 1.040e+01 1dssG c.2.1.3 30026 d.81.1.1 39941 1pmi 441 1.162e+01 1pmi 1h30A 392 1.235e+01 b.29.1.4 76604 b.29.1.4 76605 2j7qA 233 1.356e+01 2ajgA 187 1.359e+01 1jj2Q 151 1.362e+01 1ffkO d.55.1.1 63102 1vl6A 378 1.393e+01 c.2.1.7 108724 c.58.1.3 108725 1kdkA 178 1.489e+01 b.29.1.4 72351 2dvmA 439 1.538e+01 1f5fA 173 1.540e+01 1d2sA b.29.1.4 24222 2a9fA 384 1.581e+01 1jdw 361 1.968e+01 1jdw 1n3bA 177 2.078e+01 c.37.1.1 79959 1mscA 130 2.086e+01 d.85.1.1 40039 1bxwA 173 2.093e+01 1bxwA f.4.1.1 43743 2fyzB 33 2.098e+01 2d4rA 147 2.168e+01 d.129.3.6 131256 1d2sA 171 2.268e+01 1d2sA b.29.1.4 24221 1v3yA 171 2.359e+01 d.167.1.1 113508 2ox6A 163 2.635e+01 2rerA 156 2.838e+01 1ws0A 152 2.857e+01 1in0A 163 2.940e+01 d.58.49.1 83694 d.58.49.1 83695 1a12A 402 3.031e+01 1a12A b.69.5.1 27663 2f15A 90 3.113e+01 2qomA 266 3.260e+01 1b7gO 341 3.308e+01 1b7gO c.2.1.3 29992 d.81.1.1 39907 1bs4A 169 3.312e+01 1bs4A d.167.1.1 42287 1po0A 662 3.445e+01 f.4.3.3 94960 2qwvA 189 3.725e+01 1dxeA 254 3.805e+01 1dxeA c.1.12.5 29310 1yylM 27 3.907e+01