PFRMAT SS
TARGET T0403
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0403.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 539
METHOD
MODEL 1
M C 0.660
G C 0.493
R C 0.346
D T 0.408
L T 0.513
Q T 0.520
V E 0.385
T E 0.760
L E 0.902
Y E 0.903
G E 0.915
T E 0.902
I E 0.762
K E 0.523
A E 0.391
G E 0.511
V E 0.713
E E 0.747
V E 0.693
S E 0.533
R T 0.337
V T 0.489
K T 0.511
D T 0.536
A T 0.500
G T 0.402
T T 0.446
Y T 0.453
K T 0.460
A T 0.486
Q T 0.495
G T 0.503
G T 0.428
K E 0.386
S E 0.644
K E 0.779
T E 0.801
A E 0.779
T E 0.686
Q E 0.578
I E 0.429
A T 0.377
D T 0.431
F T 0.467
G T 0.495
S T 0.397
K E 0.393
I E 0.409
G E 0.397
F E 0.584
K E 0.538
G E 0.654
Q E 0.480
E E 0.346
D T 0.564
L T 0.652
G T 0.684
N T 0.689
G T 0.471
M E 0.609
K E 0.943
A E 0.990
I E 0.989
W E 0.993
Q E 0.988
L E 0.950
E E 0.879
Q E 0.474
K C 0.429
A C 0.455
S E 0.420
I T 0.438
A T 0.686
G T 0.750
T T 0.577
N T 0.568
S T 0.544
G T 0.420
W E 0.344
G E 0.379
N E 0.456
R E 0.648
Q E 0.748
S E 0.814
F E 0.845
I E 0.849
G E 0.783
L E 0.532
K T 0.381
G T 0.585
G T 0.495
F T 0.402
G E 0.432
T E 0.835
V E 0.888
R E 0.870
A E 0.774
G E 0.447
N E 0.476
L E 0.558
N E 0.395
T T 0.373
V H 0.406
L H 0.480
K H 0.424
D H 0.392
S H 0.497
G H 0.334
D C 0.321
N C 0.350
V C 0.440
N T 0.522
A T 0.575
W T 0.603
E T 0.601
S T 0.443
G T 0.436
S T 0.466
N T 0.386
T T 0.357
E C 0.330
D C 0.359
V T 0.392
L T 0.418
G T 0.395
L T 0.361
G T 0.387
T T 0.425
I T 0.398
G T 0.426
R T 0.427
V T 0.392
E T 0.298
S E 0.410
R E 0.448
E T 0.397
I E 0.388
S E 0.772
V E 0.925
R E 0.928
Y E 0.897
D E 0.716
S E 0.456
P E 0.369
V E 0.399
F T 0.430
A T 0.630
G E 0.468
F E 0.838
S E 0.953
G E 0.971
S E 0.981
V E 0.981
Q E 0.972
Y E 0.947
V E 0.838
P E 0.502
R T 0.660
D T 0.635
N T 0.475
A T 0.483
N T 0.480
D T 0.461
V T 0.417
D T 0.524
K T 0.577
Y T 0.600
K T 0.542
H E 0.501
T E 0.820
K E 0.912
S E 0.954
S E 0.947
R E 0.953
E E 0.945
S E 0.915
Y E 0.858
H E 0.720
A E 0.433
G T 0.455
L T 0.413
K E 0.376
Y E 0.619
E E 0.792
N E 0.794
A E 0.859
G E 0.806
F E 0.796
F E 0.733
G E 0.659
Q E 0.484
Y T 0.307
A T 0.444
G T 0.422
S T 0.430
F T 0.434
A T 0.357
K T 0.345
Y T 0.357
A T 0.368
D T 0.387
L T 0.361
N T 0.388
T T 0.371
D T 0.379
A T 0.396
E T 0.373
R T 0.332
V T 0.323
A T 0.330
V T 0.335
N T 0.356
T T 0.396
A T 0.413
N T 0.376
A T 0.363
H T 0.338
P C 0.357
V T 0.364
K T 0.348
D E 0.388
Y E 0.588
Q E 0.798
V E 0.928
H E 0.945
R E 0.969
V E 0.954
V E 0.937
A E 0.946
G E 0.932
Y E 0.908
D E 0.862
A E 0.652
N T 0.521
D T 0.433
L E 0.751
Y E 0.905
V E 0.956
S E 0.960
V E 0.960
A E 0.923
G E 0.898
Q E 0.816
Y E 0.774
E E 0.657
A E 0.501
A E 0.437
K T 0.310
N T 0.409
N T 0.433
E T 0.441
V T 0.444
G T 0.431
S T 0.458
I T 0.467
K T 0.478
G T 0.471
K T 0.399
K T 0.344
H E 0.377
E E 0.557
Q E 0.621
T E 0.615
Q E 0.825
V E 0.944
A E 0.980
A E 0.979
T E 0.975
A E 0.970
A E 0.967
Y E 0.942
R E 0.802
F E 0.572
G C 0.512
N T 0.341
V H 0.433
T H 0.482
P H 0.430
R H 0.471
V E 0.514
S E 0.509
Y E 0.613
A E 0.699
H E 0.743
G E 0.748
F E 0.583
K E 0.455
A E 0.308
K T 0.355
V T 0.368
N T 0.439
G T 0.483
V T 0.426
K T 0.440
D T 0.565
A T 0.485
N T 0.519
Y T 0.461
Q C 0.377
Y E 0.482
D E 0.677
Q E 0.936
V E 0.972
I E 0.983
V E 0.972
G E 0.929
A E 0.829
D E 0.815
Y E 0.822
D E 0.800
F E 0.598
S T 0.473
K T 0.448
R T 0.394
T E 0.397
S E 0.644
A E 0.824
L E 0.938
V E 0.973
S E 0.984
A E 0.956
G E 0.943
W E 0.923
L E 0.892
K E 0.758
Q E 0.450
G T 0.743
K T 0.809
G T 0.576
A T 0.542
G T 0.454
K E 0.404
V E 0.512
E E 0.655
Q E 0.793
T E 0.709
A E 0.507
S C 0.739
M C 0.937
END