PFRMAT SS
TARGET T0403
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0403.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 539
METHOD
MODEL 1
M C 0.763
G C 0.412
R E 0.381
D C 0.220
L C 0.273
Q E 0.424
V E 0.756
T E 0.875
L E 0.901
Y E 0.897
G E 0.785
T E 0.863
I E 0.906
K E 0.841
A E 0.623
G E 0.652
V E 0.892
E E 0.915
V E 0.879
S E 0.805
R E 0.529
V C 0.276
K T 0.322
D S 0.291
A C 0.365
G C 0.298
T C 0.291
Y C 0.282
K C 0.287
A T 0.300
Q T 0.357
G T 0.309
G C 0.359
K E 0.403
S E 0.677
K E 0.802
T E 0.775
A E 0.703
T E 0.647
Q E 0.478
I E 0.279
A C 0.323
D C 0.300
F S 0.285
G C 0.289
S C 0.362
K E 0.338
I E 0.283
G E 0.311
F E 0.467
K E 0.503
G E 0.475
Q E 0.411
E E 0.446
D E 0.451
L T 0.333
G T 0.463
N T 0.575
G T 0.326
M E 0.496
K E 0.871
A E 0.984
I E 0.996
W E 0.995
Q E 0.991
L E 0.938
E E 0.666
Q E 0.357
K C 0.311
A E 0.485
S C 0.460
I T 0.334
A T 0.575
G T 0.406
T S 0.412
N C 0.356
S C 0.330
G C 0.352
W C 0.259
G T 0.310
N E 0.228
R C 0.318
Q E 0.554
S E 0.681
F E 0.732
I E 0.675
G E 0.607
L E 0.501
K E 0.383
G S 0.391
G T 0.378
F E 0.435
G E 0.751
T E 0.908
V E 0.950
R E 0.933
A E 0.820
G E 0.556
N E 0.389
L C 0.417
N C 0.381
T C 0.583
V H 0.699
L H 0.649
K H 0.592
D H 0.584
S H 0.432
G T 0.325
D C 0.281
N C 0.399
V C 0.410
N C 0.717
A T 0.422
W T 0.452
E S 0.260
S C 0.310
G T 0.253
S C 0.298
N C 0.278
T C 0.287
E C 0.344
D C 0.459
V T 0.283
L T 0.368
G C 0.268
L C 0.247
G T 0.242
T C 0.284
I C 0.278
G T 0.347
R T 0.329
V C 0.354
E C 0.317
S C 0.348
R E 0.364
E E 0.303
I E 0.432
S E 0.781
V E 0.929
R E 0.953
Y E 0.817
D E 0.743
S C 0.575
P T 0.304
V T 0.404
F C 0.322
A T 0.460
G T 0.368
F C 0.496
S E 0.882
G E 0.952
S E 0.970
V E 0.979
Q E 0.969
Y E 0.934
V E 0.782
P E 0.407
R S 0.282
D S 0.312
N C 0.376
A T 0.299
N T 0.330
D C 0.294
V C 0.328
D T 0.347
K T 0.331
Y T 0.408
K T 0.268
H C 0.381
T E 0.658
K E 0.818
S E 0.908
S E 0.918
R E 0.914
E E 0.906
S E 0.880
Y E 0.762
H E 0.441
A S 0.386
G S 0.370
L C 0.284
K E 0.507
Y E 0.617
E E 0.547
N E 0.566
A E 0.592
G E 0.523
F E 0.493
F H 0.563
G H 0.612
Q H 0.477
Y H 0.293
A C 0.470
G C 0.331
S T 0.271
F C 0.291
A C 0.320
K C 0.282
Y C 0.296
A C 0.294
D C 0.286
L C 0.255
N C 0.270
T C 0.257
D C 0.281
A C 0.239
E C 0.260
R C 0.285
V C 0.344
A C 0.390
V C 0.321
N C 0.238
T C 0.293
A C 0.255
N T 0.239
A C 0.318
H C 0.328
P C 0.396
V C 0.312
K T 0.229
D E 0.255
Y E 0.561
Q E 0.785
V E 0.929
H E 0.946
R E 0.956
V E 0.948
V E 0.925
A E 0.945
G E 0.930
Y E 0.926
D E 0.873
A E 0.596
N S 0.309
D T 0.325
L E 0.673
Y E 0.832
V E 0.885
S E 0.884
V E 0.907
A E 0.934
G E 0.935
Q E 0.915
Y E 0.812
E E 0.723
A E 0.637
A E 0.454
K C 0.283
N C 0.352
N C 0.279
E T 0.284
V C 0.271
G C 0.316
S C 0.291
I T 0.243
K T 0.311
G C 0.299
K C 0.313
K C 0.329
H E 0.341
E E 0.501
Q E 0.579
T E 0.554
Q E 0.765
V E 0.906
A E 0.954
A E 0.939
T E 0.889
A E 0.901
A E 0.910
Y E 0.913
R E 0.822
F E 0.462
G C 0.620
N T 0.321
V H 0.484
T H 0.508
P H 0.489
R H 0.439
V E 0.538
S E 0.563
Y E 0.621
A E 0.611
H E 0.593
G E 0.586
F E 0.594
K E 0.517
A E 0.371
K E 0.289
V E 0.249
N T 0.333
G T 0.275
V C 0.302
K C 0.267
D C 0.326
A C 0.308
N C 0.354
Y C 0.375
Q C 0.350
Y C 0.362
D E 0.512
Q E 0.853
V E 0.947
I E 0.968
V E 0.944
G E 0.854
A E 0.854
D E 0.840
Y E 0.844
D E 0.832
F E 0.478
S C 0.404
K S 0.411
R H 0.481
T H 0.760
S H 0.838
A H 0.919
L H 0.938
V H 0.946
S H 0.916
A H 0.939
G H 0.949
W H 0.905
L H 0.834
K H 0.769
Q H 0.463
G T 0.515
K T 0.622
G T 0.423
A C 0.466
G T 0.424
K S 0.268
V E 0.535
E E 0.750
Q E 0.801
T E 0.662
A E 0.446
S C 0.391
M C 0.698
END