# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e54A 332 8.52e-27 1e54A f.4.3.1 59258 2fgqX 332 1.59e-26 f.4.3.1 133439 2omf 340 4.12e-17 2omf 1hxxA 340 4.38e-17 2omf f.4.3.1 61385 2j1nA 346 9.50e-17 2por 301 6.38e-07 2por 2porA 301 6.38e-07 f.4.3.1 43759 3prn 289 3.89e-05 3prn 3prnA 289 3.89e-05 f.4.3.1 43761 1prn 289 4.91e-05 3prn 2o4vA 411 2.20e-03 1a0tP 413 1.51e-02 1a0tP f.4.3.2 43794 1t16A 427 1.07e-01 f.4.3.4 106242 2jqyA 280 1.08e-01 1qd5A 275 1.67e-01 1qd5A f.4.2.1 43748 2f1cX 286 2.41e-01 2iwvA 281 2.61e-01 1qd6C 240 2.82e-01 1qd5A 2odjA 428 3.88e-01 1p4tA 155 4.55e-01 f.4.1.1 87779 1ryp2 233 8.50e-01 1ryp2 1g0u1 266 8.55e-01 1txnA 328 9.95e-01 d.248.1.1 112779 1by5A 714 1.44e+00 1by5A f.4.3.3 43800 2hpwA 233 1.57e+00 1q40B 219 1.58e+00 d.17.4.2 95771 2fcpA 723 1.76e+00 1by5A f.4.3.3 43802 2qdrA 303 1.96e+00 2mprA 421 2.13e+00 2mprA f.4.3.2 43788 1cb8A 678 2.47e+00 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 2c9jA 223 2.54e+00 1i78A 297 2.57e+00 f.4.4.1 66046 1tk1A 260 3.39e+00 d.248.1.1 107066 1rhi3 236 3.80e+00 1aym3 1bxxA 285 3.84e+00 1bw8A b.2.7.1 22483 1i31A 314 3.88e+00 1bw8A b.2.7.1 22481 1bw8A 321 4.22e+00 1bw8A b.2.7.1 22482 1qfgA 725 4.39e+00 1by5A f.4.3.3 43803 2oitA 434 4.52e+00 1kmoA 774 6.49e+00 f.4.3.3 72753 2f1vA 197 6.68e+00 1ux6A 350 7.29e+00 b.29.1.16 100145 g.75.1.1 100146 1ajoA 214 7.33e+00 1axkA b.29.1.2 24179 1kjlA 146 7.51e+00 b.29.1.3 118689 3b9cA 144 7.74e+00 2v5iA 559 7.75e+00 1nqeA 594 7.89e+00 f.4.3.3 86027 1po0A 751 7.90e+00 f.4.3.3 94960 1zuxA 224 8.31e+00 2rh7A 239 8.63e+00 2nn8A 138 9.54e+00 b.29.1.3 138392 2gufA 594 1.02e+01 f.4.3.3 135736 2dd7A 216 1.02e+01 1y43B 173 1.10e+01 2icrA 237 1.13e+01 1yiqA 689 1.14e+01 2il5A 171 1.15e+01 1ytqA 204 1.20e+01 b.11.1.1 124012 b.11.1.1 124013 1a3k 137 1.31e+01 1a3k 1hn0A 1021 1.45e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 2b3rA 134 1.48e+01 1fx5A 242 1.49e+01 1led b.29.1.1 24135 1mjc 69 1.49e+01 1mjc 1mjcA 69 1.49e+01 b.40.4.5 25319 1yq2A 1024 1.50e+01 b.1.4.1 123843 b.1.4.1 123844 b.18.1.5 123845 b.30.5.1 123846 c.1.8.3 123847 1m8uA 173 1.53e+01 b.11.1.1 91233 b.11.1.1 91234 1qexA 288 1.54e+01 1qexA b.32.1.1 24425 1txkA 498 1.56e+01 b.1.18.2 107425 b.30.5.9 107426 1qj8A 148 1.60e+01 1qj8A f.4.1.1 43744 1jjoC 261 1.68e+01 1qjpA 171 1.71e+01 1bxwA f.4.1.1 43742 1yi9A 309 1.75e+01 b.121.1.2 123276 b.121.1.2 123277 1w99A 558 1.83e+01 1of5A 221 1.91e+01 d.17.4.2 86933 2dddA 225 1.92e+01 1fnlA 175 1.98e+01 2fcbA b.1.1.4 21783 b.1.1.4 21784 1cid 177 2.21e+01 1cid 1cidA 177 2.21e+01 b.1.1.1 19740 b.1.1.3 21679 1xmzA 241 2.22e+01 1jssA 224 2.25e+01 d.129.3.2 71844 1k1xA 659 2.26e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 2gw3A 225 2.36e+01 2ie2A 222 2.41e+01 2bb2 181 2.70e+01 2bb2 2pbnA 313 2.76e+01 1n0xL 215 2.80e+01 b.1.1.1 91532 b.1.1.2 91533 1bxwA 172 2.87e+01 1bxwA f.4.1.1 43743 1iqyA 638 2.90e+01 b.30.2.1 76763 d.17.2.1 76764 d.17.2.1 76765 1xssA 225 2.92e+01 1phm 310 2.96e+01 1phm 1uisA 231 3.03e+01 d.22.1.1 99431 1h4aX 173 3.05e+01 b.11.1.1 83479 b.11.1.1 83480 1hxs1 302 3.12e+01 1fepA 724 3.30e+01 1fepA f.4.3.3 43808 2ehzA 302 3.35e+01 2gzbA 166 3.47e+01 2bklA 695 3.56e+01 2j5uA 255 3.62e+01 1sdwA 314 3.73e+01 b.121.1.2 98810 b.121.1.2 98811