Best Alignments for T0403

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fgqX	1.7551e-34	2fgqX/T0403-2fgqX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2j1nA	2.0523e-32	2j1nA/T0403-2j1nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2porA	2.2334e-30	2porA/T0403-2porA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
1e54A	2.4305e-30	1e54A/T0403-1e54A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
1hxxA	3.3468e-30	1hxxA/T0403-1hxxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
1prn	9.6201e-27	1prn/T0403-1prn-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2omf	7.4829e-26	2omf/T0403-2omf-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3prnA	1.1820e-25	3prnA/T0403-3prnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.1
2por	1.4498e-25	2por/T0403-2por-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3prn	1.6621e-24	3prn/T0403-3prn-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t16A	5.3922e-02	1t16A/T0403-1t16A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.4
2o4vA	8.9057e-02	2o4vA/T0403-2o4vA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fepA	1.3838e-01	1fepA/T0403-1fepA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
2gufA	8.2326e-01	2gufA/T0403-2gufA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
2fcpA	9.3128e-01	2fcpA/T0403-2fcpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1nqeA	1.2299e+00	1nqeA/T0403-1nqeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1qfgA	1.4848e+00	1qfgA/T0403-1qfgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1by5A	2.4551e+00	1by5A/T0403-1by5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3
1p4tA	2.7790e+00	1p4tA/T0403-1p4tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.1.1
1po0A	2.9330e+00	1po0A/T0403-1po0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.4.3.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001