# List of top-scoring protein chains for T0403.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 8.84e-24 f.4.3.1 133439 2fgrA 332 1.24e-23 f.4.3.1 133440 1hxuA 340 4.57e-14 f.4.3.1 61384 2omfA 340 6.06e-14 f.4.3.1 43749 1hxxA 340 6.39e-14 f.4.3.1 61385 1mpfA 340 6.64e-14 f.4.3.1 43752 1bt9A 340 7.03e-14 f.4.3.1 43756 1phoA 330 7.23e-14 f.4.3.1 43758 2ixwA 343 7.88e-14 1gfoA 340 1.18e-13 f.4.3.1 43753 1gfmA 340 1.19e-13 f.4.3.1 43755 1gfpA 340 1.23e-13 f.4.3.1 43750 1osmA 342 1.23e-13 f.4.3.1 43769 2j1nA 346 1.76e-13 1gfqA 340 2.11e-13 f.4.3.1 43751 1gfnA 334 3.89e-13 f.4.3.1 43754 2ixxA 354 7.83e-13 1hxtA 340 2.32e-12 f.4.3.1 61383 2porA 301 0.002657 f.4.3.1 43759 1f74A 293 2.572 c.1.10.1 29079 2prnA 289 3.798 f.4.3.1 43763 2odjA 428 4.559 1prnA 289 6.118 f.4.3.1 43762 6prnA 289 6.316 f.4.3.1 43765 5prnA 289 6.528 f.4.3.1 43764 3prnA 289 7.241 f.4.3.1 43761 1bh3A 289 7.373 f.4.3.1 43766 7prnA 289 8.710 f.4.3.1 43768 8prnA 289 8.904 f.4.3.1 43767 1wiwA 290 11.12 c.80.1.1 114681 2iciA 227 15.06 1i78A 297 18.60 f.4.4.1 66046 1mmaA 762 18.76 b.34.3.1,c.37.1.9 24587,32184 1mmnA 762 18.90 b.34.3.1,c.37.1.9 24582,32179 1w9kA 770 19.54 1w9iA 770 19.66 1yv3A 762 20.15 1d0yA 761 20.16 b.34.3.1,c.37.1.9 24581,32178 1w9lA 770 20.80 1w9jA 770 21.08 2akaA 776 21.13 1jx2A 776 21.29 b.34.3.1,c.37.1.9 67402,67403 1lvkA 762 23.00 b.34.3.1,c.37.1.9 24576,32173 1h6s1 307 24.09 1qd6C 240 25.00 1fmvA 761 25.08 b.34.3.1,c.37.1.9 24580,32177 2dj0A 137 25.70 1vomA 762 26.44 b.34.3.1,c.37.1.9 24577,32174 2dpsA 254 28.97 2z3oA 233 29.13 1g8xA 1010 29.18 k.1.1.1 46378 1fw3A 275 29.80 f.4.2.1 60054 1qd5A 275 30.09 f.4.2.1 43748 2gt4A 160 31.59 1kxpD 458 34.05 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1ma9A 458 35.06 a.126.1.1,a.126.1.1,a.126.1.1 78887,78888,78889 1j78A 458 35.62 a.126.1.1,a.126.1.1,a.126.1.1 66397,66398,66399 1ryaA 160 35.93 d.113.1.5 105122 1p4tA 155 37.72 f.4.1.1 87779 2cxaA 256 38.07 d.108.1.6 130993 1ilzA 275 38.66 f.4.2.1 66209 2c58A 537 40.69 c.69.1.1 129891 1eeaA 534 42.47 c.69.1.1 34609 2cekA 535 42.49 c.69.1.1 130347 2dfpA 534 42.50 c.69.1.1 34597 1ut6A 537 42.53 c.69.1.1 119698 1ea5A 537 42.53 c.69.1.1 34592 1gqrA 532 42.56 c.69.1.1 70374 1w6rA 543 42.64 c.69.1.1 114283 1uxvA 501 43.32 c.82.1.1 108127 1uxtA 501 45.22 c.82.1.1 108125 1mmgA 762 50.70 b.34.3.1,c.37.1.9 24579,32176 2d6oX 159 56.59 2d6mA 159 61.46 1nhcA 336 64.84 b.80.1.3 91879 1u8fO 335 67.85 c.2.1.3,d.81.1.1 119626,119627 1znqO 338 69.28 c.2.1.3,d.81.1.1 125401,125402 3gpdG 334 75.97 c.2.1.3,d.81.1.1 30029,39944