# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fgqX	332	1.10e-34	f.4.3.1	133439
1e54A	332	4.51e-32	f.4.3.1	59258
2j1nA	346	1.04e-30		
1hxxA	340	8.74e-30	f.4.3.1	61385
2porA	301	2.72e-28	f.4.3.1	43759
2por	301	4.87e-28		
2omf	340	8.28e-27		
1prn	289	1.91e-26		
3prnA	289	2.20e-26	f.4.3.1	43761
3prn	289	2.40e-26		
1fepA	724	0.001832	f.4.3.3	43808
1t16A	427	0.01076	f.4.3.4	106242
1nqeA	594	0.02945	f.4.3.3	86027
2fcpA	723	0.04419	f.4.3.3	43802
2gufA	594	0.05506	f.4.3.3	135736
1by5A	714	0.06502	f.4.3.3	43800
1qfgA	725	0.09664	f.4.3.3	43803
2o4vA	411	0.1165		
1qj8A	148	0.1555	f.4.1.1	43744
1po0A	751	0.3437	f.4.3.3	94960
1bxwA	172	0.5653	f.4.1.1	43743
1kmoA	774	0.5746	f.4.3.3	72753
2hdiA	639	0.9898		
2jqyA	280	1.683		
1tlyA	278	1.868	f.4.6.1	107143
1p4tA	155	1.965	f.4.1.1	87779
1i78A	297	2.353	f.4.4.1	66046
1pvc1	301	2.661		
2odjA	428	4.557		
2iwvA	281	5.877		
2f1cX	286	5.896		
2f1vA	197	6.233		
1qjpA	171	6.405	f.4.1.1	43742
3cihA	739	7.663		
1hxs1	302	8.160		
1r89A	437	11.43	a.160.1.3,d.218.1.7,d.58.16.2	97221,97222,97223
2cu9A	161	13.33		
1x1iA	752	17.83	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
2icrA	237	21.58		
1of5A	221	22.02	d.17.4.2	86933
1k3rA	268	22.32	b.40.4.10,c.116.1.2	72018,72019
2awkA	228	23.46		
1qcrG	70	23.73	f.23.13.1	43677
1aym1	285	24.18		
1txnA	328	24.21	d.248.1.1	112779
1al21	302	24.93		
1f1sA	814	26.61	a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2	64928,64929,64930,64931
1ryiA	382	27.38	c.3.1.2,d.16.1.3	118813,118814
1q40B	219	27.79	d.17.4.2	95771
1tme1	274	29.93		
1ar61	302	31.19		
2dpyA	438	31.29		
1xssA	225	33.10		
2dddA	225	33.74		
1iknA	286	34.06	b.1.18.1,b.2.5.3	21936,22449
3bw8A	217	34.33		
1ar71	302	34.64		
1f1uA	323	34.85	d.32.1.3,d.32.1.3	83200,83201
2bhgA	209	36.97		
2obwA	258	37.02		
2fblA	153	38.85	d.63.1.2	133249
1cb8A	678	41.54	a.102.3.2,b.24.1.1,b.30.5.2	18849,23898,24422
2f1wA	158	45.63		
1rhi3	236	47.78		
1xkrA	206	49.40	d.252.1.1	115421
1ng4A	390	50.32	c.3.1.2,d.16.1.3	85666,85667
2dp5A	332	50.47		
1qd5A	275	50.63	f.4.2.1	43748
1w23A	360	52.61	c.67.1.4	114088
1be3G	81	55.90	f.23.13.1	43669
1xkwA	665	56.04		
1rocA	155	59.98	b.1.22.1	97673
1ww7A	160	63.45		
1t17A	148	64.74	d.129.3.6	112215
2mev1	277	66.01		
3c5nA	246	66.65		
1ve9A	347	66.69	c.4.1.2,d.16.1.3	100571,100572
1z6fA	363	67.43	b.105.1.1,e.3.1.1	124520,124521
2qedA	258	67.57		
2j21A	219	68.92		
1pczA	191	69.99	d.129.1.1,d.129.1.1	41292,41293
1jmtA	104	70.39	d.58.7.3	63180
1mz5A	638	77.09	b.29.1.15,b.68.1.1	79679,79680
2ekdA	207	77.17		
1lvmA	229	78.87	b.47.1.3	78243
2dvyA	226	79.47		
2ozpA	345	81.20		
1qh5A	260	81.68	d.157.1.2	42057
1o7eA	276	82.41	e.3.1.1	92622
1obfO	335	82.51	c.2.1.3,d.81.1.1	86768,86769
1jw9B	249	83.71	c.111.1.1	67377
2vadA	223	88.32		
1t82A	155	88.87	d.38.1.5	106639
1zglB	192	89.22	b.1.1.2,d.19.1.1	125033,125034