# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.17e-30 f.4.3.1 133439 1e54A 332 2.05e-28 f.4.3.1 59258 2j1nA 346 2.32e-27 1hxxA 340 1.55e-26 f.4.3.1 61385 2porA 301 5.30e-25 f.4.3.1 43759 2por 301 1.11e-24 2omf 340 5.29e-24 1prn 289 1.69e-23 3prnA 289 2.16e-23 f.4.3.1 43761 3prn 289 2.32e-23 1fepA 724 0.009259 f.4.3.3 43808 1t16A 427 0.01313 f.4.3.4 106242 2gufA 594 0.03191 f.4.3.3 135736 2fcpA 723 0.03904 f.4.3.3 43802 1nqeA 594 0.04119 f.4.3.3 86027 1by5A 714 0.04799 f.4.3.3 43800 1qfgA 725 0.06176 f.4.3.3 43803 1bxwA 172 0.09653 f.4.1.1 43743 1qj8A 148 0.1203 f.4.1.1 43744 2o4vA 411 0.1204 1tlyA 278 0.3520 f.4.6.1 107143 1p4tA 155 0.4170 f.4.1.1 87779 2jqyA 280 0.5665 1po0A 751 0.7438 f.4.3.3 94960 1pvc1 301 1.126 1kmoA 774 1.292 f.4.3.3 72753 2hdiA 639 1.319 1i78A 297 1.750 f.4.4.1 66046 2awkA 228 1.835 1qjpA 171 2.609 f.4.1.1 43742 2iwvA 281 2.990 1hxs1 302 3.081 2f1cX 286 5.548 1txnA 328 6.949 d.248.1.1 112779 1x1iA 752 7.423 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1xkwA 665 7.470 2odjA 428 7.873 1aym1 285 10.69 2f1vA 197 11.88 1ar71 302 12.00 1al21 302 12.80 1okiA 210 13.18 b.11.1.1,b.11.1.1 93255,93256 1ar61 302 13.47 1f1uA 323 13.50 d.32.1.3,d.32.1.3 83200,83201 1f1sA 814 14.69 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 2cu9A 161 15.05 1xssA 225 16.78 2mev1 277 17.06 1qd5A 275 18.82 f.4.2.1 43748 2f1wA 158 19.79 1tme1 274 20.53 1z6fA 363 20.66 b.105.1.1,e.3.1.1 124520,124521 2obwA 258 20.90 1cb8A 678 26.04 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2icrA 237 26.10 1r89A 437 26.70 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1k07A 263 28.98 d.157.1.1 77218 2dp5A 332 30.18 3c5nA 246 31.26 2dpyA 438 32.01 3cihA 739 33.73 2yv8A 164 34.03 2qedA 258 34.29 1rhi3 236 34.62 1t17A 148 37.71 d.129.3.6 112215 1rocA 155 37.72 b.1.22.1 97673 1tk1A 260 38.28 d.248.1.1 107066 1qh5A 260 38.35 d.157.1.2 42057 1epwA 1290 39.10 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2vadA 223 41.49 2rh7A 239 42.05 2dvyA 226 42.53 2bhgA 209 42.91 2oqcA 327 44.43 1wraA 308 46.58 d.157.1.8 121190 1t82A 155 48.75 d.38.1.5 106639 2gm6A 208 48.81 1qd6C 240 51.04 1w23A 360 51.20 c.67.1.4 114088 2uurA 245 52.00 2c0rA 362 52.87 c.67.1.4 129604 1f5fA 205 52.97 b.29.1.4 24222 2j21A 219 53.36 2dddA 225 53.66 1lxkA 721 54.97 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 2aexA 346 55.34 2g6yA 217 55.63 2gw3A 225 55.79 1jw9B 249 58.11 c.111.1.1 67377 1xm8A 254 62.86 d.157.1.2 115475 3bw8A 217 62.93 1pov1 302 63.21 1hn0A 1021 64.09 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1of5A 221 64.98 d.17.4.2 86933 1bev1 281 66.38 1q40B 219 67.14 d.17.4.2 95771 2ejhA 255 67.26 1ww7A 160 67.89 1pczA 191 70.48 d.129.1.1,d.129.1.1 41292,41293 1eguA 731 71.60 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1n7oA 721 73.07 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1a5kC 566 73.45 b.92.1.1,c.1.9.2 28425,29047 1zuxA 224 77.01 1fwcC 567 78.44 b.92.1.1,c.1.9.2 28410,29032 2gcuA 245 79.12 3c5xC 130 79.84 2d6mA 159 81.98 1lvmA 229 82.82 b.47.1.3 78243 1ve9A 347 85.58 c.4.1.2,d.16.1.3 100571,100572 1ej6A 1289 85.87 i.7.1.1 45967 2pvrA 334 88.32