# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 6.03e-29 f.4.3.1 133439 1e54A 332 6.10e-27 f.4.3.1 59258 2j1nA 346 2.43e-25 1hxxA 340 9.28e-25 f.4.3.1 61385 2porA 301 1.90e-23 f.4.3.1 43759 2por 301 3.51e-23 2omf 340 3.07e-22 1prn 289 3.84e-22 3prnA 289 4.25e-22 f.4.3.1 43761 3prn 289 5.97e-22 1fepA 724 0.005431 f.4.3.3 43808 2gufA 594 0.01384 f.4.3.3 135736 1nqeA 594 0.01604 f.4.3.3 86027 1t16A 427 0.03621 f.4.3.4 106242 2fcpA 723 0.05210 f.4.3.3 43802 1by5A 714 0.05592 f.4.3.3 43800 1qfgA 725 0.09287 f.4.3.3 43803 1po0A 751 0.1421 f.4.3.3 94960 1kmoA 774 0.2887 f.4.3.3 72753 1qj8A 148 0.3879 f.4.1.1 43744 2jqyA 280 0.8011 1i78A 297 0.8341 f.4.4.1 66046 1p4tA 155 0.9816 f.4.1.1 87779 2f1cX 286 1.261 2hdiA 639 1.281 1bxwA 172 1.621 f.4.1.1 43743 2o4vA 411 1.915 2iwvA 281 2.152 1qd5A 275 3.743 f.4.2.1 43748 1tlyA 278 4.085 f.4.6.1 107143 1qd6C 240 4.749 1xkwA 665 5.795 2f1vA 197 6.677 1r89A 437 7.087 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2odjA 428 7.669 2obwA 258 8.426 1a5kC 566 8.879 b.92.1.1,c.1.9.2 28425,29047 2oqcA 327 9.129 1ww7A 160 10.66 1a5mC 566 11.14 b.92.1.1,c.1.9.2 28423,29045 2qs8A 418 11.39 2dpyA 438 11.41 1qjpA 171 11.61 f.4.1.1 43742 2qedA 258 11.80 2f1wA 158 12.05 2bhgA 209 12.47 1fwcC 567 13.80 b.92.1.1,c.1.9.2 28410,29032 1xm8A 254 15.00 d.157.1.2 115475 1kuuA 202 17.23 d.153.2.1 73019 1pvc1 301 17.75 2dvyA 226 18.26 1ubkL 534 19.82 e.18.1.1 88422 2oodA 475 20.14 2g19A 244 20.44 2r8cA 426 20.63 1ryiA 382 22.18 c.3.1.2,d.16.1.3 118813,118814 1ubpC 570 23.06 b.92.1.1,c.1.9.2 28432,29054 1a5lC 566 23.60 b.92.1.1,c.1.9.2 28426,29048 1f1sA 814 23.95 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1t82A 155 25.63 d.38.1.5 106639 1e3dB 542 26.08 e.18.1.1 59189 2mprA 421 27.03 f.4.3.2 43788 2ntkA 222 28.89 d.153.2.1 138583 1lvmA 229 28.90 b.47.1.3 78243 1t17A 148 31.37 d.129.3.6 112215 1qh5A 260 31.83 d.157.1.2 42057 2g3fA 421 32.16 2qv3A 457 32.36 1xkrA 206 33.63 d.252.1.1 115421 1kcxA 518 36.94 b.92.1.3,c.1.9.6 90953,90954 1ej6A 1289 37.17 i.7.1.1 45967 1ejrC 567 39.24 b.92.1.1,c.1.9.2 28420,29042 1jdpA 441 40.14 c.93.1.1 62906 1k07A 263 40.20 d.157.1.1 77218 3b79A 129 41.65 1of5A 221 42.43 d.17.4.2 86933 2ftwA 521 42.97 b.92.1.3,c.1.9.6 134083,134084 3b9oA 440 44.53 1jmxA 494 45.26 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2fblA 153 45.90 d.63.1.2 133249 1qqhA 144 48.35 b.91.1.1 28404 1a0tP 413 49.10 f.4.3.2 43794 2j21A 219 49.77 1gkpA 458 51.36 b.92.1.3,c.1.9.6 70231,70232 1ng4A 390 51.54 c.3.1.2,d.16.1.3 85666,85667 1x1iA 752 51.92 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1k0eA 453 52.57 d.161.1.1 67938 1hxs1 302 57.18 1y0bA 197 57.69 c.61.1.1 122476 2pbnA 313 60.05 1jw9B 249 64.00 c.111.1.1 67377 1wkoA 180 65.43 2hbtA 247 66.90 2ax3A 502 67.61 c.72.1.4,c.104.1.1 127477,127478 1jmtA 104 68.79 d.58.7.3 63180 3bs4A 260 69.74 1grj 158 71.41 2h4vA 320 73.96 1ve9A 347 74.00 c.4.1.2,d.16.1.3 100571,100572 1dpeA 507 74.75 c.94.1.1 35799 1obfO 335 76.04 c.2.1.3,d.81.1.1 86768,86769 1txnA 328 76.15 d.248.1.1 112779 1iabA 200 79.33 d.92.1.8 40312 2pvaA 345 79.55 d.153.1.3 41850 3cc6A 281 80.96 2puzA 419 82.00 2dfzA 381 82.50 1ejxC 567 85.29 b.92.1.1,c.1.9.2 83184,83185 1mz5A 638 88.47 b.29.1.15,b.68.1.1 79679,79680 2aioA 269 89.18 d.157.1.1 126829 1acf 125 89.28