# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fgqX	332	1.03e-31	f.4.3.1	133439
1e54A	332	2.11e-29	f.4.3.1	59258
2j1nA	346	6.18e-28		
1hxxA	340	2.63e-27	f.4.3.1	61385
2porA	301	1.13e-25	f.4.3.1	43759
2por	301	2.43e-25		
2omf	340	1.44e-24		
1prn	289	3.25e-24		
3prn	289	3.67e-24		
3prnA	289	4.12e-24	f.4.3.1	43761
1fepA	724	0.001945	f.4.3.3	43808
1t16A	427	0.01502	f.4.3.4	106242
1nqeA	594	0.02182	f.4.3.3	86027
2gufA	594	0.03847	f.4.3.3	135736
1by5A	714	0.1897	f.4.3.3	43800
2fcpA	723	0.2089	f.4.3.3	43802
1po0A	751	0.4023	f.4.3.3	94960
1qj8A	148	0.4208	f.4.1.1	43744
1kmoA	774	0.5734	f.4.3.3	72753
1qfgA	725	0.6697	f.4.3.3	43803
1bxwA	172	0.8282	f.4.1.1	43743
2o4vA	411	1.026		
1p4tA	155	1.037	f.4.1.1	87779
2hdiA	639	1.069		
1tlyA	278	1.198	f.4.6.1	107143
2f1cX	286	1.779		
2iwvA	281	1.988		
2jqyA	280	2.772		
1i78A	297	2.843	f.4.4.1	66046
1pvc1	301	5.184		
1xkwA	665	8.085		
2bhgA	209	9.540		
2f1vA	197	10.83		
1qjpA	171	11.38	f.4.1.1	43742
3cihA	739	13.45		
1hxs1	302	14.43		
1qd5A	275	14.94	f.4.2.1	43748
1r89A	437	15.86	a.160.1.3,d.218.1.7,d.58.16.2	97221,97222,97223
2awkA	228	18.25		
1ww7A	160	18.29		
1qd6C	240	19.06		
1ryiA	382	20.27	c.3.1.2,d.16.1.3	118813,118814
1f1uA	323	25.20	d.32.1.3,d.32.1.3	83200,83201
1d7bA	186	26.88	b.1.9.1	22307
2obwA	258	29.11		
1aym1	285	30.76		
2odjA	428	31.66		
1ar61	302	32.09		
1z6fA	363	33.00	b.105.1.1,e.3.1.1	124520,124521
1qcrG	70	33.18	f.23.13.1	43677
2cu9A	161	34.40		
1a5kC	566	34.73	b.92.1.1,c.1.9.2	28425,29047
2dvyA	226	35.33		
1ar71	302	36.08		
1al21	302	36.10		
2dfzA	381	36.49		
1txnA	328	36.88	d.248.1.1	112779
1x1iA	752	40.04	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
3bw8A	217	42.76		
1be3G	81	43.83	f.23.13.1	43669
1t17A	148	44.31	d.129.3.6	112215
2qv3A	457	45.73		
2qedA	258	46.54		
1of5A	221	47.54	d.17.4.2	86933
2oqcA	327	49.55		
2oxaA	600	51.65		
2dpyA	438	52.67		
1obfO	335	52.74	c.2.1.3,d.81.1.1	86768,86769
1f1sA	814	53.14	a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2	64928,64929,64930,64931
1lvmA	229	53.46	b.47.1.3	78243
1qh5A	260	53.46	d.157.1.2	42057
1ng4A	390	53.71	c.3.1.2,d.16.1.3	85666,85667
1a5mC	566	57.82	b.92.1.1,c.1.9.2	28423,29045
1w23A	360	63.24	c.67.1.4	114088
1tme1	274	63.38		
1my5A	114	64.90	b.1.18.1	79673
2mev1	277	66.67		
1t70A	255	67.39	d.159.1.9	112275
2ozpA	345	71.26		
2ekdA	207	71.60		
2fblA	153	72.67	d.63.1.2	133249
1fwcC	567	73.31	b.92.1.1,c.1.9.2	28410,29032
1d2mA	665	75.62	c.37.1.19,c.37.1.19	32417,32418
2dp5A	332	81.73		
2h98A	313	82.37		
2f1wA	158	82.47		
2gsaA	432	82.62	c.67.1.4	34446
2vfjA	366	85.28		
2cjlA	204	85.60