# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 1.43e-33 f.4.3.1 133439 1e54A 332 5.18e-31 f.4.3.1 59258 2j1nA 346 1.47e-29 1hxxA 340 9.04e-29 f.4.3.1 61385 2porA 301 3.23e-27 f.4.3.1 43759 2por 301 5.47e-27 2omf 340 8.31e-26 3prnA 289 1.54e-25 f.4.3.1 43761 1prn 289 1.78e-25 3prn 289 1.98e-25 1fepA 724 0.003520 f.4.3.3 43808 1t16A 427 0.01170 f.4.3.4 106242 1nqeA 594 0.04876 f.4.3.3 86027 2gufA 594 0.08252 f.4.3.3 135736 2fcpA 723 0.2312 f.4.3.3 43802 1by5A 714 0.2560 f.4.3.3 43800 1po0A 751 0.2968 f.4.3.3 94960 1qj8A 148 0.3345 f.4.1.1 43744 1kmoA 774 0.4325 f.4.3.3 72753 1qfgA 725 0.8614 f.4.3.3 43803 2o4vA 411 0.8861 1bxwA 172 0.9819 f.4.1.1 43743 1p4tA 155 1.282 f.4.1.1 87779 1i78A 297 1.861 f.4.4.1 66046 1tlyA 278 2.459 f.4.6.1 107143 2hdiA 639 2.798 2iwvA 281 2.806 2jqyA 280 3.816 2f1vA 197 4.850 1pvc1 301 5.217 2f1cX 286 5.294 3cihA 739 12.48 1ryiA 382 13.41 c.3.1.2,d.16.1.3 118813,118814 1r89A 437 15.87 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1qjpA 171 17.41 f.4.1.1 43742 1hxs1 302 18.55 2bhgA 209 24.72 1ww7A 160 27.34 2qedA 258 27.51 2dfzA 381 27.76 1xkwA 665 28.17 2obwA 258 28.68 2cu9A 161 29.21 1x1iA 752 29.38 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1ar61 302 30.30 1aym1 285 31.06 1obfO 335 31.55 c.2.1.3,d.81.1.1 86768,86769 1qd5A 275 32.00 f.4.2.1 43748 1qcrG 70 34.66 f.23.13.1 43677 1ar71 302 35.05 1txnA 328 37.20 d.248.1.1 112779 1al21 302 37.52 1a5kC 566 38.50 b.92.1.1,c.1.9.2 28425,29047 1f1uA 323 41.18 d.32.1.3,d.32.1.3 83200,83201 3bw8A 217 42.52 2dvyA 226 42.75 1be3G 81 44.90 f.23.13.1 43669 1z6fA 363 44.96 b.105.1.1,e.3.1.1 124520,124521 1e3dB 542 44.98 e.18.1.1 59189 2awkA 228 45.21 2oqcA 327 46.50 2dpyA 438 46.83 1ng4A 390 49.04 c.3.1.2,d.16.1.3 85666,85667 2ozpA 345 50.54 1w23A 360 52.31 c.67.1.4 114088 1ubpC 570 53.30 b.92.1.1,c.1.9.2 28432,29054 2h98A 313 53.93 1d7bA 186 55.69 b.1.9.1 22307 1a5mC 566 56.72 b.92.1.1,c.1.9.2 28423,29045 2mev1 277 57.36 1a0tP 413 57.88 f.4.3.2 43794 1qd6C 240 57.99 1tme1 274 62.93 1qh5A 260 62.94 d.157.1.2 42057 1fwcC 567 63.14 b.92.1.1,c.1.9.2 28410,29032 2oxaA 600 63.61 2odjA 428 64.98 1f1sA 814 67.18 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1ubkL 534 69.74 e.18.1.1 88422 1lvmA 229 69.75 b.47.1.3 78243 1t17A 148 79.19 d.129.3.6 112215 1ei9A 279 79.68 c.69.1.13 34713 2qv3A 457 79.74 2f1wA 158 82.88 2j21A 219 83.22 2nygA 273 83.92