# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 7.42e-35 f.4.3.1 133439 1e54A 332 4.21e-32 f.4.3.1 59258 2j1nA 346 1.29e-30 1hxxA 340 8.86e-30 f.4.3.1 61385 2porA 301 4.63e-28 f.4.3.1 43759 2por 301 5.73e-28 2omf 340 1.14e-26 1prn 289 2.48e-26 3prnA 289 2.56e-26 f.4.3.1 43761 3prn 289 2.86e-26 1fepA 724 0.004801 f.4.3.3 43808 1t16A 427 0.01191 f.4.3.4 106242 1nqeA 594 0.06790 f.4.3.3 86027 2gufA 594 0.1055 f.4.3.3 135736 2fcpA 723 0.1975 f.4.3.3 43802 1by5A 714 0.2758 f.4.3.3 43800 1po0A 751 0.4668 f.4.3.3 94960 1qj8A 148 0.5428 f.4.1.1 43744 1kmoA 774 0.6352 f.4.3.3 72753 1qfgA 725 0.7933 f.4.3.3 43803 1bxwA 172 0.8367 f.4.1.1 43743 1p4tA 155 1.145 f.4.1.1 87779 2o4vA 411 1.766 1tlyA 278 2.065 f.4.6.1 107143 1i78A 297 2.525 f.4.4.1 66046 2hdiA 639 3.326 2jqyA 280 3.726 2iwvA 281 3.950 1pvc1 301 4.693 2f1cX 286 4.725 2f1vA 197 8.667 1ryiA 382 11.67 c.3.1.2,d.16.1.3 118813,118814 3cihA 739 12.43 1hxs1 302 15.77 1xkwA 665 20.70 1qjpA 171 20.74 f.4.1.1 43742 1r89A 437 20.77 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1x1iA 752 20.79 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1ww7A 160 22.91 2bhgA 209 26.41 1ar61 302 27.31 1f1uA 323 30.24 d.32.1.3,d.32.1.3 83200,83201 1aym1 285 31.26 1w23A 360 31.63 c.67.1.4 114088 2dvyA 226 32.24 1al21 302 33.93 1ar71 302 34.01 1z6fA 363 34.53 b.105.1.1,e.3.1.1 124520,124521 2mev1 277 34.93 1f1sA 814 35.01 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 2obwA 258 35.08 2cu9A 161 35.17 1obfO 335 35.75 c.2.1.3,d.81.1.1 86768,86769 1txnA 328 36.11 d.248.1.1 112779 1qcrG 70 37.31 f.23.13.1 43677 1a5kC 566 37.41 b.92.1.1,c.1.9.2 28425,29047 2qedA 258 37.85 2dfzA 381 38.79 2oqcA 327 40.33 3bw8A 217 42.73 2awkA 228 45.01 1ubpC 570 45.80 b.92.1.1,c.1.9.2 28432,29054 1ng4A 390 48.34 c.3.1.2,d.16.1.3 85666,85667 2h98A 313 48.61 2ozpA 345 49.74 1be3G 81 50.01 f.23.13.1 43669 1tme1 274 53.14 1a5mC 566 54.37 b.92.1.1,c.1.9.2 28423,29045 1qd5A 275 54.57 f.4.2.1 43748 1lvmA 229 56.23 b.47.1.3 78243 2nygA 273 57.38 2c0rA 362 58.41 c.67.1.4 129604 2fblA 153 62.22 d.63.1.2 133249 1fwcC 567 63.24 b.92.1.1,c.1.9.2 28410,29032 2oxaA 600 63.96 2dpyA 438 65.01 1d7bA 186 65.69 b.1.9.1 22307 1e3dB 542 66.65 e.18.1.1 59189 1qh5A 260 66.75 d.157.1.2 42057 1t17A 148 69.46 d.129.3.6 112215 2j21A 219 71.15 2cjlA 204 78.73 2f1wA 158 82.70 1h1wA 289 83.78 d.144.1.7 83460 2odjA 428 85.29 1qd6C 240 85.96 1cb8A 678 87.35 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1lssA 140 89.39 c.2.1.9 74246